Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 143 6e-29 seq11 132 1e-25 seq7 132 1e-25 seq10 104 6e-17 seq8 104 6e-17 seq12 100 7e-16 >seq1 Length=109333515 Score = 143 bits (158), Expect = 6e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| || || || || || || || || ||||| ||||| | || ||||| ||||||| Sbjct 97684337 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 97684278 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| ||||| || ||| || ||||| || || || || || ||||| || || | Sbjct 97684277 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 97684218 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | |||| ||||||||||| ||||| ||||||||||||||||| || ||||| || |||| Sbjct 97684217 CAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 97684158 Query 288464 ATATCTGCATTATG 288477 | ||||||||| || Sbjct 97684157 AGATCTGCATTTTG 97684144 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||| | ||| || || ||||| || |||||||| Sbjct 87072262 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 87072321 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || ||||| ||||| |||| |||||| || |||||| Sbjct 87072322 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGG---TCTGGG 87072378 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || |||||||| || ||||| || || || || | ||| || || Sbjct 87072379 GGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCA 87072438 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || || || || ||||| |||||||| Sbjct 87072439 ACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 87072488 >seq11 Length=66223686 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| || || || ||||| | || ||||| ||||| |||||||| || Sbjct 536204 CCGCCACGGAGCCTCAGGACAAGATGCAGAGTAGACTCTTTCTGGATGTTATAGTCTGCA 536145 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| || | ||||||| |||| Sbjct 536144 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGG 536085 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || ||||| || || |||||||| || || |||| ||| |||| || Sbjct 536084 ATCCCTTCCTTGTCCTGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTC---TCC 536028 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| |||||||| ||||||||||| || || |||||||| Sbjct 536027 ACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 535978 Score = 109 bits (120), Expect = 1e-18 Identities = 166/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| ||| || |||||||| || || || || Sbjct 535292 CCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 535233 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||||| || || |||||||| | ||| || |||||| Sbjct 535232 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGG---TCTGGG 535176 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || ||||| || || || ||||| ||||| || || || || | || |||| Sbjct 535175 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTC--- 535119 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || || ||||||||||||||||| || || || || |||||| Sbjct 535118 TCGACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCATT 535065 Score = 104 bits (114), Expect = 6e-17 Identities = 165/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || ||||||| || ||||||||||| || || || || Sbjct 535065 TCCACCACGCAGACGGAGGACAAGATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGC 535006 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 || || || || ||||| | ||||| || || |||||||| | ||| || |||| Sbjct 535005 AAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTG---ATCTGG 534949 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGA 288419 || || ||||| || || || || || ||||| || || || || | || ||| Sbjct 534948 AGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTC-- 534891 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| ||||| || ||||| || ||||||||||| Sbjct 534890 -TCGACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 534838 Score = 84.2 bits (92), Expect = 5e-11 Identities = 152/220 (69%), Gaps = 12/220 (5%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || || |||| ||| || ||| |||| || || || || || || || || || Sbjct 522889 AAGGACAAGGTGAAGGGTGGACTCCTTTAGGATGTTGTAATCAGCAAGTGTTCGGCCATC 522948 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTT 288377 ||| | ||||| || || |||||||| | ||| || |||||| || |||| || Sbjct 522949 TTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGG---TCTGGGGAAATACCTTTCTT 523005 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGT 288434 || | ||||| ||||| || || || || | || |||| || || || || || Sbjct 523006 GTCTTCAATTTTAGCTTTGACATTATCAATGGTGTCTGAGCTC---TCGACCTCAAGAGT 523062 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||||||||| || || || || |||||| Sbjct 523063 TATAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCATT 523102 >seq7 Length=79292169 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | ||| || || ||||| || ||||| || Sbjct 77535947 CCACCACGGAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 77535888 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| |||||||||| | ||| || |||||| Sbjct 77535887 AGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGG---TCTGGG 77535831 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| ||||||||||| || || |||||||| || || | ||| ||| Sbjct 77535830 GGGATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCC 77535771 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||| |||||||| ||||| |||||||| Sbjct 77535770 ACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 77535721 Score = 129 bits (142), Expect = 1e-24 Identities = 170/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | ||| || || |||||||| ||||| || Sbjct 77535719 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGCT 77535660 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| || || |||||||| ||||||| | ||| || |||||| Sbjct 77535659 AGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGG---TCTGGG 77535603 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || ||||| ||||||||||| || || || ||||| || || | || ||| | Sbjct 77535602 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCT---T 77535546 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || || |||||||| ||||| |||||||| Sbjct 77535545 TCGACCTCAAGGGTAATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 77535493 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||| | || || || ||||| || || || || Sbjct 77535491 CCACCACGTAGACGAAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT 77535432 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || || || ||||| |||||||| || | || ||| || ||| Sbjct 77535431 AGAGTACGTCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGA---TCCGGG 77535375 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| ||||||||||| || || || ||||| || || | ||| ||| Sbjct 77535374 GGAATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCC 77535315 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| ||||| || || || |||||||| Sbjct 77535314 ACCTCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 77535265 Score = 102 bits (112), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || || || |||||||| ||||| || Sbjct 77536631 CCACCACGGAGACGGAGGACAAGGTGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCA 77536572 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||||| | ||| || |||| Sbjct 77536571 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 77536512 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || || || || ||||| || || |||||||| || || |||| || ||| || Sbjct 77536511 ATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCGATAGTGTCAGAACTC---TCC 77536455 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | ||||| ||||||||||||| ||||| || || ||||||||| Sbjct 77536454 ACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 77536404 >seq10 Length=82529941 Score = 104 bits (114), Expect = 6e-17 Identities = 165/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | |||| ||| || ||||| || || || ||||| Sbjct 1142268 TCCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGC 1142327 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || || ||||| | || || || || |||||||| | ||| || ||||| Sbjct 1142328 GAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGG---TCTGG 1142384 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGA 288419 | || ||||| || |||||||| || ||||| || || || || | || ||| Sbjct 1142385 GGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCT--- 1142441 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 1142442 TTCCACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 1142495 >seq8 Length=70546659 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||| || || ||||| || || || || | |||||| ||||| ||||| Sbjct 3210926 CCTTCCTTGTCCTGTATCTTAGCTTTAACATTATCGATGGTATCGCTGGATTCAACTTCC 3210867 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| || ||||||||||| || ||||||||||||||| Sbjct 3210866 AGCGTTATCGTTTTACCGGTCAGAGTTTTCACGAATATCTGCATT 3210822 >seq12 Length=83305730 Score = 100 bits (110), Expect = 7e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || || | ||| ||| || ||||| || ||||| || Sbjct 82262390 CCACCACGGAGACGAAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 82262331 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || || || || | || ||||||||||| |||| | ||| || ||| Sbjct 82262330 AGCGTTCGGCCATCCTCAAGCTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGTGGA 82262271 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || || || || || || || || | || || ||||| Sbjct 82262270 ATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACC 82262211 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | || || ||||| || || || ||||| || || ||||||||| Sbjct 82262210 TCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTGCATT 82262163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654218628136