Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq11 116 3e-21 seq1 95.1 9e-15 seq12 89.7 4e-13 seq10 89.7 4e-13 seq7 84.2 2e-11 >seq11 Length=66223686 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | || || | ||| || || || || || || |||||||| || Sbjct 535976 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 535917 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||| | || || | |||||| ||||| | ||||||||||||||||| ||| Sbjct 535916 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 535857 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || |||||||| ||| ||||| ||| ||| | || || ||||| | | || || Sbjct 535856 ATACCCTCCTTGTCTTGAATCTTTGC-TTTCACATTGTCAATGGTATCTGAACTCTCAAC 535798 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || |||| ||| || ||||| |||||||| Sbjct 535797 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 535750 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || ||||| ||||||||||| || ||| | ||||| | ||| Sbjct 535268 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 535209 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| | ||| ||||| ||||| ||||||||||| |||||| Sbjct 535208 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 535149 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || | || || || | || || || || || ||| Sbjct 535148 GCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGTC 535089 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| |||||||| Sbjct 535088 AGAGTTTTAACAAAGATTTGCAT 535066 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| | | | ||| | || ||||| || ||||| || |||||||||| | Sbjct 535750 TGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAAT--C 535693 Query 15008 TGAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || | || | || || | ||| || ||||| | ||||| | ||| ||||| Sbjct 535692 TGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGG 535633 Query 15066 TGGAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTT 15124 ||||| || |||||||| || ||||| ||| ||| | || || ||||| | | | Sbjct 535632 AGGAATACCCTCCTTGTCTTGGATCTTTGC-TTTAACATTGTCGATGGTATCTGAACTCT 535574 Query 15125 CTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| || || ||||||| || || ||||| |||||||| Sbjct 535573 CAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 535522 Score = 89.7 bits (98), Expect = 4e-13 Identities = 165/241 (68%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || | ||||||||| || |||||||| ||||||||||| Sbjct 535064 CCACCACGCAGACGGAGGACAAGATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 535005 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | ||||| | ||||| ||||| | |||| | ||| || || ||| Sbjct 535004 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 534945 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||| || ||| ||| | || || || || | | || || Sbjct 534944 ATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGACC 534885 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAAT 15189 || | || ||||| || || || || || || ||||| || ||| || ||||||| || Sbjct 534884 TCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGC--ATCTGAAATATAT 534827 Query 15190 T 15190 | Sbjct 534826 T 534826 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || ||| | ||||||||||| || ||| | ||||| | ||| Sbjct 522899 TGAAGGGTGGACTCCTTTAGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 522958 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| | ||| ||||| | ||| |||| |||||| |||||| Sbjct 522959 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGAAATACCTTTCTTGTCTTCAATTTTA 523018 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || | || || || | || || || || || ||| Sbjct 523019 GCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 523078 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| |||||||| Sbjct 523079 AGAGTTTTAACAAAGATTTGCAT 523101 >seq1 Length=109333515 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 14987 CTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 |||| || ||||||||||| ||| ||| | | | ||||| | || || || ||| | Sbjct 97684337 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 97684279 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 ||||| ||||| ||||| |||||| ||||||||||| ||| || ||| ||| | Sbjct 97684278 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 97684219 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || ||||| ||||| ||| || || | || || || || || || |||||||| || Sbjct 97684218 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 97684159 Query 15166 AAAATTTGCATATT 15179 || || ||||| || Sbjct 97684158 AAGATCTGCATTTT 97684145 >seq12 Length=83305730 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 || ||||| || || || || |||||||| || ||| || ||| | || || | || Sbjct 82214208 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTG 82214266 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | ||||| ||||| ||||| |||||| ||||||||||| ||| || Sbjct 82214267 CTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTT 82214326 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || || || ||||| ||||||||||| || || || || Sbjct 82214327 AGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGT 82214386 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180 ||| || || ||||| || ||||| ||| Sbjct 82214387 CAGGGTCTTCACAAAGATCTGCATTTTT 82214414 >seq10 Length=82529941 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || ||||||||||| || | | | || || Sbjct 1141831 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGGCCATCCTCA 1141890 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || || | ||||| | ||| ||||| ||||| ||||||||||| Sbjct 1141891 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 1141950 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || || ||| |||| || || | ||| ||||| || Sbjct 1141951 ATCTTGGCTTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 1142010 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| ||| || || ||||||||||| Sbjct 1142011 CCTGTCAAAGTCTTCACGAAAATTTGCAT 1142039 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || ||||||||||| || | || |||| || Sbjct 1142059 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 1142118 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| || | |||| | || ||||| ||||| ||||||||||| Sbjct 1142119 AGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 1142178 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || || || ||| |||| || || | ||| ||||| || Sbjct 1142179 ATCTTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 1142238 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| |||||| || ||||||||||| Sbjct 1142239 CCTGTCAAAGTTTTCACGAAAATTTGCAT 1142267 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || ||||| |||||||||||| ||| | | | ||||| Sbjct 1142287 ACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGGGTACGGCCATCTTCA 1142346 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| || | |||| | ||| ||||| ||||| ||||||||||| Sbjct 1142347 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 1142406 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || || || |||| || || | ||| ||||| || Sbjct 1142407 ATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTT 1142466 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| ||||| || ||||| Sbjct 1142467 CCAGTGAGGGTTTTGACAAATATCTGCAT 1142495 >seq7 Length=79292169 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || ||||| |||||||| || || || ||||||||||| ||| ||| | | |||| || Sbjct 77535473 ACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT-AGAGTACGTCCGTCCTC 77535415 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || || ||| | || | | || || || |||||||||||||| || Sbjct 77535414 CAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCCTG 77535355 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || || | || || ||||| | |||| || |||| ||| || || || Sbjct 77535354 GATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTCTT 77535295 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| ||||| || ||||| Sbjct 77535294 TCCGGTGAGAGTTTTCACAAAGATCTGCAT 77535265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391947731420