Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11 122 8e-23 seq7 118 1e-21 seq12 89.7 5e-13 seq10 89.7 5e-13 seq1 89.7 5e-13 >seq11 Length=66223686 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | || | ||| | || ||||||||||| || |||||||| | Sbjct 535065 TCCACCACGCAGACGGAGGACAAGATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGC 535006 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || |||||||| ||||| |||||| || ||||||||| ||||| Sbjct 535005 AAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGG 534946 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||| | ||| | | || |||| | || | |||||| | |||||||| Sbjct 534945 AATGCCTTCCTTGT-CTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGA 534887 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | || || ||||| || || || ||||| |||||||| Sbjct 534886 CCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 534838 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || |||||||| | | || || ||| || |||||||| ||| Sbjct 535262 GTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCA 535203 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT- 127035 || |||||| | |||||| || || || || || |||||||| ||| ||| |||| Sbjct 535202 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCT-TGAATTTTAGCTTT 535144 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | |||| |||||| | |||||||| || | || | || || ||||||||||| Sbjct 535143 GACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGTCAGAGT 535084 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| ||||| || ||||| Sbjct 535083 TTTAACAAAGATTTGCAT 535066 Score = 107 bits (118), Expect = 2e-18 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| ||||| |||||||| ||| ||| | ||| || || || |||||| Sbjct 535718 GTTGATTCTTTCTGAATGTTGTAATCTGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCA 535659 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||||| |||||| || ||||| || ||||||||||| ||| || ||||| Sbjct 535658 GCAAAGATCAATCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTT-TGCTTT 535600 Query 127037 A--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | ||| |||| ||| || | |||||| || || | || | || || || |||| | Sbjct 535599 AACATTG-TCGATGGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATG 535541 Query 127095 TTTTTACAAAAATCTGCATG 127114 | || ||||| || |||||| Sbjct 535540 TCTTGACAAATATTTGCATG 535521 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | | ||| | || | ||||| ||||||||||| ||||||||||| || || Sbjct 535520 CCACCCCTCAGTCGAAGAACAAGATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAGCC 535461 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || || || || || || |||||| || |||||| || ||||| Sbjct 535460 AGGGTCCTTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGA 535401 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| ||||| ||| | |||| || | ||| || | ||| || || Sbjct 535400 ATCCCTTCCTTATCCTGAATTTTGGCCTTCACGTTG-TCAATGGTATCGGAACTTTCAAC 535342 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || || || || || || || ||||| |||||||| Sbjct 535341 TTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCAT 535294 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || |||||||||| ||| | || ||||| || || || ||||| || | | || | Sbjct 535967 AAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTC 535908 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || || ||||| ||||| ||||||| ||||| || || || || || |||||| Sbjct 535907 CCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCC 535848 Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 |||| | ||| | | ||| || | | || | ||| || | |||||| || || | || Sbjct 535847 TTGT-CTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 535789 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || || || |||| ||| || ||||| || |||||| Sbjct 535788 AATTGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCATG 535749 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||| | || |||||||| | | || || ||| || |||||||| ||| Sbjct 522905 GTGGACTCCTTTAGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCA 522964 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || | || || | |||||| ||||| ||| Sbjct 522965 GCAAAGATCAGCCTCTGCTGGTCTGGGGAAATACCTTTCTTGTCTTCAATTTTAGCTTTG 523024 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | |||||||| || | || | || || |||||||||||| Sbjct 523025 ACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTT 523084 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 523085 TTAACAAAGATTTGCAT 523101 >seq7 Length=79292169 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| ||||| || ||||| || ||| ||||| ||| || Sbjct 77536386 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTGCGGCCATCCTC 77536327 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| | ||||| | ||||||||| || || || ||||||||||| Sbjct 77536326 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTG 77536267 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | |||| |||||| | ||||| || || | ||| | ||||| Sbjct 77536266 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTT 77536207 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || || ||||| || ||||| Sbjct 77536206 CCCGGTAAGGGTCTTAACAAAGATTTGCAT 77536177 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || |||||||| || | | ||||| ||| || ||||| || ||| Sbjct 77536601 GTAGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCA 77536542 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| ||||||| | |||||| || || || || |||||||||||| ||| | | || || Sbjct 77536541 GCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTTAGCTTT 77536483 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| ||||| | |||||| || || | || | || || ||||||| || Sbjct 77536482 CACATTGTCGATAGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGT 77536423 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 77536422 CTTCACAAAGATCTGCAT 77536405 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | | |||||| || || ||||| || ||| Sbjct 77536145 GTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCGTCCTCGAGCTGCTTACCA 77536086 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| | |||||| || || || || |||||||||||| ||| || ||| Sbjct 77536085 GCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTC 77536026 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | || || || || | || | || || ||||| || || Sbjct 77536025 ACATTATCAATGGTGTCGGAGCTTTCTACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTC 77535966 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 77535965 TTAACAAAAATCTGCAT 77535949 >seq12 Length=83305730 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | | ||| || ||| || ||||| || || Sbjct 82214214 GTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCG 82214273 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || || || ||||| |||||||| || || ||| Sbjct 82214274 GCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTA 82214333 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 82214334 ACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTC 82214393 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 82214394 TTCACAAAGATCTGCAT 82214410 >seq10 Length=82529941 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| ||||| || ||||| || ||| || | ||| || ||||| || || Sbjct 1141159 GTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCT 1141218 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| || |||||| || | || || |||||||||||| || || ||| Sbjct 1141219 GCAAAGATCAGTCTCTGCTGGTCCTGTGGGATTCCCTCCTTGTCCTGAATCTTAGCCTTC 1141278 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | |||||| || || | || | ||||| || |||| || Sbjct 1141279 ACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTC 1141338 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 1141339 TTCACAAAAATCTGCAT 1141355 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 |||||| | ||| | || || || || ||||||||||||||| | | || | ||| Sbjct 1141371 CAACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGCTAATGTCCTTCCATC 1141430 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 || | ||| || ||||| | ||||| | ||||| || || || || ||||| ||||| Sbjct 1141431 TTCCAACTGCTTGCCAGCAAATATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTC 1141490 Query 127021 CGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCG 127079 | || || ||| | |||| || | |||||| | ||| || || || | ||| | | Sbjct 1141491 CTGAATCTTGGCCTTTACGTTG-TCAATGGTGTCAGAACTTTCCACCTCAAGGGTAATAG 1141549 Query 127080 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||| |||| || || || || || ||||| Sbjct 1141550 TCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 1141583 >seq1 Length=109333515 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| ||||| |||||||| | | || || ||| || ||||| ||||| ||| ||| Sbjct 97684337 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 97684278 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGT 127042 ||||||||||||| || || || || || ||||||| | ||| | | || |||| | Sbjct 97684277 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATTG 97684219 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | ||||| | || ||||| | || | ||| || || || |||||||| || Sbjct 97684218 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 97684159 Query 127103 AAAATCTGCAT 127113 || |||||||| Sbjct 97684158 AAGATCTGCAT 97684148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500728674880