Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq10 116 3e-21 seq1 109 5e-19 seq11 102 7e-17 seq7 102 7e-17 seq12 98.7 9e-16 >seq10 Length=82529941 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||||||||| ||||| || ||||||||||| || ||||| |||||| Sbjct 1141354 ATACCTCCCCTGAGCCTCAACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCG 1141413 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || || || ||||||| | ||||||||| || Sbjct 1141414 GCTAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAATATCAACCTTTGCTGGTCTGGT 1141473 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || ||||| || ||||| || || | || | || | |||||| ||| || Sbjct 1141474 GGGATACCCTCTTTGTCCTGAATCTTGGCCTTTA-CGTTGTCAATGGTGTCAGAACTTTC 1141532 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || ||||| || | || || || || |||||||| Sbjct 1141533 CACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 1141583 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 ||||| | || ||||| || ||||| | || || |||||||| ||||| ||||| || Sbjct 82034563 CCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGC- 82034621 Query 45173 GACGGTTTTAGAATCGTCC---AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 | | | || |||| ||| ||||||||||| | |||| |||| ||| || || | Sbjct 82034622 -AAG--TGTATAATCATCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGA 82034678 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 ||||| |||||||| |||| ||| ||| ||| | || | ||||| |||| || Sbjct 82034679 GGGAATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTCAATGGTGTTGGAACTCTT 82034738 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||||| || || || | |||||||| ||||| ||||||||| Sbjct 82034739 CACATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCATC 82034790 Score = 98.7 bits (108), Expect = 9e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | |||||||| || || || || |||||||| || || || || ||||| Sbjct 500309 TTCCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAG 500368 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | |||| || ||| |||||||||||||| || | |||| || ||||| || || | Sbjct 500369 CCAGGGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 500428 Query 45232 GAATGCCTTCTTTATCTTG 45250 | |||||||||||||| || Sbjct 500429 GTATGCCTTCTTTATCCTG 500447 >seq1 Length=109333515 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| ||||| || || || ||||| ||||| || || ||| Sbjct 87072262 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 87072321 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | || ||||| ||| | ||||| || |||||||| || ||| Sbjct 87072322 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGA 87072381 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || || || ||||| || | ||||||||||||||| || Sbjct 87072382 ATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 87072441 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| || || ||||| ||||| || || || |||||| Sbjct 87072442 TCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 87072489 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || ||||| ||| | |||||||| ||||||||||| ||||| ||||| || |||||||| Sbjct 97684293 TGCTTTCCGGCGAAGATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATC 97684234 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || ||||| || | |||||| || || ||||| || || | ||| || || Sbjct 97684233 TTAGCTTTGACATTGTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCC 97684174 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| || || || ||||| Sbjct 97684173 GTAAGAGTTTTCACGAAGATCTGCAT 97684148 >seq11 Length=66223686 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | || ||||| || ||||| || |||||||| || ||||| Sbjct 535067 ATTCCACCACGCAGACGGAGGACAAGATGAAGGGTTGACTCTTTTTGGATGTTGTAATCA 535008 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||||| || || | |||| || ||||| || || Sbjct 535007 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 534948 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || |||||||| || ||||| || | |||||| ||| |||| Sbjct 534947 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCG 534888 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| | || || ||||| || || || ||||| || |||||| Sbjct 534887 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCATC 534837 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||||||||| || ||||| | ||| ||| || Sbjct 535274 ACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCA 535215 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | |||| | |||||||| || ||||| ||||| || |||||| Sbjct 535214 AGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGA 535155 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||||| || | |||||| || |||||| || ||||| | || || Sbjct 535154 ATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTC 535095 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| |||||||| ||||| |||||||| Sbjct 535094 CCGGTCAGAGTTTTAACAAAGATTTGCAT 535066 >seq7 Length=79292169 Score = 102 bits (112), Expect = 7e-17 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || || || ||||| | | ||| | ||| || || || ||||| |||||||| || || Sbjct 77535722 ATACCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCA 77535663 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | ||| ||| ||||| || |||||||| | ||||| | |||||||| || Sbjct 77535662 GCT-AGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGG 77535604 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 ||||||||||| ||||| || || || |||| || | || | |||||| || | Sbjct 77535603 GGGAATGCCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCTTT 77535545 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || |||| ||| || || || ||||| || || || || ||||| Sbjct 77535544 CGACCTCAAGGGTAATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 77535493 >seq12 Length=83305730 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || || ||||| | | ||| || || || || |||||||| ||||| || || || ||| Sbjct 82262390 CCACCACGGAGACGAAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 82262331 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || || ||| || | || ||||||||| | ||||| | |||||||| || || Sbjct 82262330 AGCG-TTCGGCCATCCTCAAGCTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGTGG 82262272 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 ||||||||| || || ||||| || || | || | |||||| || ||||| || Sbjct 82262271 AATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 82262212 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | |||| || ||||| ||||| || || ||||| || ||||| Sbjct 82262211 CTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTGCAT 82262164 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || || ||||| | | || || || || || || ||||| ||||| || || || ||| Sbjct 82214184 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 82214243 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || || ||| || | || || || ||| | |||||||| |||||||| || || Sbjct 82214244 AGCG-TTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGG 82214302 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 ||||||||| || |||||||| || || | || | |||||| || ||||| || Sbjct 82214303 AATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 82214362 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | |||| || ||||| || || || || ||||| || ||||| Sbjct 82214363 CTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 82214410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003132199520