Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 6e-13 seq7 86.0 8e-12 >seq4 Length=77197300 Score = 89.7 bits (98), Expect = 6e-13 Identities = 188/278 (68%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||| |||||||| |||||||| || ||||| || || || || | |||||||| | Sbjct 76665404 GAACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACC 76665345 Query 12851 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 | ||| |||| | |||| | ||||| || ||||| || |||||||| || ||||| Sbjct 76665344 TCCAAGACCTGCACCTCTTTGCCTTCCGACAGCATCAATCTCATCAATGAACACAATACA 76665285 Query 12911 CGGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || | ||| || || ||||| | ||| | ||||| || || ||||||| Sbjct 76665284 AGGC-GCTTTCGACTTTGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACACCCA 76665226 Query 12970 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 13029 |||||| ||| ||||| | | || | ||| || || || || | ||||| | Sbjct 76665225 CAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCCTCACCAG 76665166 Query 13030 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 | | |||| || | ||||||||||| || |||||| Sbjct 76665165 CTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGGT 76665128 >seq7 Length=79292169 Score = 86.0 bits (94), Expect = 8e-12 Identities = 194/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 |||||| || ||||| | || | || |||||| ||||| || || || ||||| Sbjct 72656261 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTAGTTGCCGC 72656202 Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823 | || | || || || | ||||| |||||||| |||||||| ||||| || | Sbjct 72656201 AACAACTATTATACCAGTATTTCCTTCGAAACCATCCATTTCAGTCAATAGTTGGTTCAG 72656142 Query 12824 GGTTTGTTCACGTTCATCATT--CGCGGGCA-TACCACCCGCACTGCGTTGCTTACCGAC 12880 ||| ||||| | ||||||||| | | || | ||| | | || |||| || || Sbjct 72656141 GGTCTGTTCCCTTTCATCATTTCCTCCTCCAATTCCAGTCCCTCT---TTGCCGCCCAAC 72656085 Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAA-CTTCAAAGA 12939 || |||||||| |||| || || || || || |||||| ||| ||| ||| | Sbjct 72656084 AGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA-A 72656026 Query 12940 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| ||||||| ||| || ||||| ||||||||||| || || Sbjct 72656025 GATCACGCACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAA 72655980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507107973920