Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 125 8e-24 seq7 120 3e-22 seq12 116 4e-21 seq11 96.9 4e-15 seq10 95.1 1e-14 >seq1 Length=109333515 Score = 125 bits (138), Expect = 8e-24 Identities = 149/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 46398 TACTCTCCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 |||| ||||| || || ||||| || | |||||| || | || ||||||||||| ||| Sbjct 97684344 TACTTACCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCG 97684285 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| ||||| ||||||||||| | || | | |||||||| ||||| ||| Sbjct 97684284 GCGAAGATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTG 97684225 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||||||||||| || || | |||||| || || ||||| || ||| Sbjct 97684224 ACATTGTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTT 97684165 Query 46577 TTAACAAAGATTTGCATTTTG 46597 || || ||||| ||||||||| Sbjct 97684164 TTCACGAAGATCTGCATTTTG 97684144 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | || |||||| ||||| |||||||||| ||||| || | Sbjct 87072273 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 87072332 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 87072333 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 87072392 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| |||| | | | |||||| || || || || | ||||| Sbjct 87072393 GTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 87072452 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || ||||| || ||||| || ||||| ||||| || Sbjct 87072453 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 87072491 >seq7 Length=79292169 Score = 120 bits (132), Expect = 3e-22 Identities = 155/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||||||||| |||||||| | | |||||| | || || Sbjct 77536386 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTGCGGCCATCCTC 77536327 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| || || ||||| | |||||| || | || | | ||||||||| Sbjct 77536326 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTG 77536267 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 |||||| ||||| | | | ||||| |||| || || |||| |||||||| Sbjct 77536266 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTC---TCAACCTCCAGGGTGATGGT 77536210 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || ||||||||||||||||| Sbjct 77536209 TTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 77536177 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| ||||||||||| || ||||| Sbjct 77536140 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCGTCCTCGAGCTGCTTACCAGCGAA 77536081 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | |||||||||| |||||| ||| | | Sbjct 77536080 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATT 77536021 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||| || |||| |||||||| || || || || || ||||| Sbjct 77536020 ATCAATGGTGTCGGAGCTTTCTACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAAC 77535961 Query 46582 AAAGATTTGCAT 46593 ||| || ||||| Sbjct 77535960 AAAAATCTGCAT 77535949 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||| ||||| | || ||||||||||| || ||||| Sbjct 77535912 CTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAA 77535853 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | ||||| ||| |||||| ||| | ||| Sbjct 77535852 GATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTATCCTGGATCTTAGCCTTCA-CGT 77535794 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| |||||| |||| |||||||| || || || || || |||| Sbjct 77535793 TGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAA 77535734 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 77535733 CGAAGATCTGCAT 77535721 Score = 104 bits (114), Expect = 3e-17 Identities = 154/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || |||| ||| |||||| |||||||||||||| | || ||||| | || || Sbjct 77536613 ACAAGGTGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCA 77536554 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| ||||| | ||||||||| | || | | |||||||||| Sbjct 77536553 AGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGA 77536494 Query 46505 ATCTT--CTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGG 46559 ||||| ||| | |||| | ||||| ||| ||||| |||| ||||||| Sbjct 77536493 ATCTTAGCTTTCACATTGTCG--ATAGTGTCAGAACTC---TCCACCTCCAAAGTGATGG 77536439 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || || |||| || || |||||||| |||||| Sbjct 77536438 TCTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 77536404 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||| | || |||||| |||||||||||||| | ||| ||||| | Sbjct 77535708 ACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGCTAGGGTGCGGCC 77535649 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | |||||| || || || ||||| | ||||||||| | || | || ||||| Sbjct 77535648 ATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTT 77535589 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 ||| |||||| ||||| ||| | | | ||||| ||| ||| || || | | Sbjct 77535588 ATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCT---TTCGACCTCAAGGG 77535533 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || || ||||| || || || || ||||| ||||| Sbjct 77535532 TAATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 77535493 >seq12 Length=83305730 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||| || || | || ||||||||||| |||||||| Sbjct 82214219 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 82214278 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||||| ||||| ||| | | Sbjct 82214279 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATT 82214338 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | || || || ||||||||||| || || || Sbjct 82214339 GTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCAC 82214398 Query 46582 AAAGATTTGCATTTTGCAC 46600 |||||| |||||||| ||| Sbjct 82214399 AAAGATCTGCATTTTTCAC 82214417 >seq11 Length=66223686 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||||||||||||||| | || |||||| ||||| |||||||| | Sbjct 535976 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 535917 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | | || || || || || || || || ||||| ||||| ||||| | || Sbjct 535916 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 535857 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCA 46544 | | ||||||||| ||||| | ||| | | | || | || || | || | Sbjct 535856 ATACCCTCCTTGTCTTGAATCTT-TGCTTTCACATTGTCAATG-GTATCTGAACTCTCAA 535799 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| || || || || || |||| || || |||||||||||||| Sbjct 535798 CCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 535750 >seq10 Length=82529941 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 7/206 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || ||||| |||| || || || | || || ||||||||||| || || Sbjct 1142304 CTCCTTTTGAATGTTGTAATCGGCGAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAA 1142363 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || ||||||||| |||||| |||| | Sbjct 1142364 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 1142423 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| ||| |||||| || | |||||||| || || || || ||||| Sbjct 1142424 GTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTT 1142480 Query 46579 AACAAAGATTTGCAT-TTTGCACAAA 46603 ||||| || ||||| | | |||||| Sbjct 1142481 GACAAATATCTGCATCTGTACACAAA 1142506 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || | || || | |||| || |||||||||||||| || Sbjct 1142077 TCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAG 1142136 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | |||||||| | || | || ||||||||| |||||| ||| | | Sbjct 1142137 ATCAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTAACATTG 1142196 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| ||| || || | |||||||| || || |||| ||||| || Sbjct 1142197 TCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCTGTCAAAGTTTTCACG 1142256 Query 46583 AAGATTTGCATT 46594 || ||||||||| Sbjct 1142257 AAAATTTGCATT 1142268 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | | |||||| ||||| | || ||||| || |||||||| |||| | Sbjct 1141357 CCTCCCCTGAGCCTCAACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGCT 1141416 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || | | || || | ||||||||| || |||||||| | |||||||| | || Sbjct 1141417 AATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAATATCAACCTTTGCTGGTCTGGTGGG 1141476 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCAC 46545 | | ||| |||||| ||||| ||| | ||| | || | |||| |||||| Sbjct 1141477 ATACCCTCTTTGTCCTGAATCTTGGCCTTTA-CGTTGTCAATGGTGTCAGAACTTTCCAC 1141535 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | || || || ||||| |||| || || || |||||||||||| Sbjct 1141536 CTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATT 1141584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238315214240