Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 4e-13 >seq7 Length=79292169 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| || || || ||||| || || || Sbjct 77535719 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGCT 77535660 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| ||||| || || || |||| || || | |||||| || | ||| Sbjct 77535659 AGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 77535600 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | |||||| || || || || || | ||| | | || |||||| |||||| || Sbjct 77535599 ATGCCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCTTTCGAC 77535541 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || |||||||| | ||| || |||||||||||||| Sbjct 77535540 CTCAAGGGTAATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 77535493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347369549197196