Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7 127 3e-24 seq4 118 1e-21 >seq7 Length=79292169 Score = 127 bits (140), Expect = 3e-24 Identities = 308/455 (68%), Gaps = 16/455 (4%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | || | || ||||| ||||| | ||||| ||||| || Sbjct 72656261 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTAGTTGCCGC 72656202 Query 15947 GATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | || | ||||| || ||| || | ||||||||||| || ||||| || ||||| Sbjct 72656201 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 72656144 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 72656143 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 72656086 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 16121 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 72656085 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA- 72656027 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || || ||| || ||||||||||||||||| || || | || | ||| Sbjct 72656026 AGATCACGCACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA 72655967 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 72655966 -ATTGAGAAAAATGGAACACCCGCTTCACCTGCAATTGCCTTTGCTAGCAAGGTTTTCCC 72655908 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 16299 ||||| || ||| | || || ||||| ||||| | | ||| || | ||| Sbjct 72655907 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAA--TACGAGCCCCTACTGCAGTA 72655850 Query 16300 -ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 |||||||||||| ||| | ||| || || | ||| Sbjct 72655849 AATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 72655815 >seq4 Length=77197300 Score = 118 bits (130), Expect = 1e-21 Identities = 197/279 (71%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || ||||||||||| |||||||| || |||| |||||||| | Sbjct 76665403 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 76665344 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | ||| |||| | |||| |||| || |||||||||||||||||||| || || || Sbjct 76665343 CCAAGACCTGCACCTCTTTGCCTTCCGACAGCATCAATCTCATCAATGAACACAATACAA 76665284 Query 16095 GGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150 || ||||| | || ||||| | ||||| || || || | || |||||||| Sbjct 76665283 GG--CGCTTTCGACTTTGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCTCCCACACC 76665228 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||||||| ||| ||||| | || || | ||| || || || ||| || ||||| Sbjct 76665227 CACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCCTCACC 76665168 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || | |||| || | ||| ||||| || |||||||| Sbjct 76665167 AGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 76665129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742306888640