Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq7 123 3e-23 >seq4 Length=77197300 Score = 127 bits (140), Expect = 2e-24 Identities = 196/280 (70%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || |||||||| || |||||||| || |||| |||||||| | Sbjct 76665403 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 76665344 Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | ||| |||| | |||| |||| || |||||||||||||||||||| |||||||| Sbjct 76665343 CCAAGACCTGCACCTCTTTGCCTTCCGACAGCATCAATCTCATCAATGAACACAATACAA 76665284 Query 9402 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || | || ||| || | ||||| | ||| | ||| || || ||||||| Sbjct 76665283 GGCGCTTTCGACTTT-----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACAC 76665229 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 | ||||||| ||| ||||| | || || | ||| || || || ||| || |||| Sbjct 76665228 CCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCCTCAC 76665169 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || | |||| || | ||| ||||| || |||||||| Sbjct 76665168 CAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 76665129 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || |||||||| || || ||||| | ||| ||| ||||| | ||| Sbjct 61314995 TGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 61314936 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | ||||||| | |||||| ||||| || || |||||| || | | Sbjct 61314935 GACATCAAATGATATGTCTTGATGACAGATTCAATATCGTCTTTGTGGATTCCAACAGAT 61314876 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 107347 || | ||| | ||| | ||| || |||||| | | |||| | | | ||| || Sbjct 61314875 ACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTACCATGAATCTTTAAAAGGTAA 61314816 Query 107348 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | | ||||||||||||| |||||||||| || | ||| |||| Sbjct 61314815 GACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 61314772 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 106446 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 106505 ||||||| |||||| || ||||| || | |||||| ||||| || ||| | || Sbjct 4558815 TGACATATCGTGGAAGAGCAATTGAGGCAAGATTGCACACAGCAGTTTCAGTAGGACTTG 4558874 Query 106506 TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 106565 |||| || | |||||| ||||||||||| ||| ||| || || || | ||||| |||| Sbjct 4558875 TGTATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATTGTGCCAAGATTCTGCTGGT 4558934 Query 106566 TACTCTTTTTGTTGCACGCATCCT 106589 | || ||| |||| || | ||||| Sbjct 4558935 TGCTTTTTCTGTTACAAGTATCCT 4558958 >seq7 Length=79292169 Score = 123 bits (136), Expect = 3e-23 Identities = 305/454 (67%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 72656261 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTAGTTGCCGC 72656202 Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 72656201 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 72656144 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 72656143 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 72656086 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| ||||||| || ||||| || || |||||| ||| | | || | Sbjct 72656085 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAA 72656026 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 |||| || || | ||| || ||||||||||||||||| || || | || | ||| Sbjct 72656025 GATCACGCACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA- 72655967 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 72655966 ATTGAGAAAAATGGAACACCCGCTTCACCTGCAATTGCCTTTGCTAGCAAGGTTTTCCCA 72655907 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGT-- 9606 ||||| || ||| | || || |||| ||||| | | ||| || | ||| Sbjct 72655906 GTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAA--TACGAGCCCCTACTGCAGTAA 72655849 Query 9607 ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 |||||||||||| ||| | ||| || || | ||| Sbjct 72655848 ATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 72655815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980711502880