Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq7 95.1 8e-15 seq11 93.3 3e-14 seq10 82.4 5e-11 >seq1 Length=109333515 Score = 100 bits (110), Expect = 2e-16 Identities = 144/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| || ||||| |||||||| || Sbjct 87072298 TCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAA 87072357 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||||||| | || | ||| |||||||| ||||| |||||| || Sbjct 87072358 ATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGAC--AT 87072415 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | |||||| || | ||| || || || ||||| || || || Sbjct 87072416 --TGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTT 87072473 Query 34967 CACAAAGATCTGCATATTCGT 34987 ||| ||||||||||| ||||| Sbjct 87072474 CACGAAGATCTGCATCTTCGT 87072494 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||||||||| || || | || | ||| |||| || ||||| |||||||| || | Sbjct 97684337 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 97684278 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | ||| |||||||| | || | || |||||||| |||||| |||||| Sbjct 97684277 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 97684218 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | || | | ||||| || | || || || || ||||| ||||| ||||| | Sbjct 97684217 CAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 97684158 Query 34972 AGATCTGCATATT 34984 |||||||||| || Sbjct 97684157 AGATCTGCATTTT 97684145 >seq7 Length=79292169 Score = 95.1 bits (104), Expect = 8e-15 Identities = 165/236 (70%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| ||| | |||||||| | || || || || ||||| ||||||| Sbjct 77536405 TTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCG 77536346 Query 34813 --AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 |||| | || |||| || ||||| || || ||||| || | | ||||| ||| | Sbjct 77536345 CCAAAG--TGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGATCTGG 77536288 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGG 34926 || | ||||||||||| ||||| ||||| || | ||||| || | Sbjct 77536287 GGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCGGAGC 77536232 Query 34927 CCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||| || | ||| |||||||| || || || ||||| |||||||| |||||| Sbjct 77536231 TCTCAACCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCATA 77536176 >seq11 Length=66223686 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||||||||| | |||| | || |||| || ||||| || || ||||| Sbjct 536168 TCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAG 536109 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | || || ||| | || | ||| |||||||| ||||| ||| || Sbjct 536108 ATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTTCACATTG 536049 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | || || || || || || |||||||||||| Sbjct 536048 TCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACA 535989 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 535988 AAGATCTGCAT 535978 >seq10 Length=82529941 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 34748 ATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805 ||||| |||||||||| | ||||| ||| | ||||| || ||||||||||||||| Sbjct 500302 ATCATGGTTCCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTG 500361 Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 || || | ||| ||| |||| |||| |||||||| ||||| || |||| ||||| Sbjct 500362 TAATCAGCCAGGGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGA 500421 Query 34866 TC 34867 || Sbjct 500422 TC 500423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633552522336