Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 147 2e-30 seq4 105 8e-18 >seq2 Length=59803892 Score = 147 bits (162), Expect = 2e-30 Identities = 560/874 (64%), Gaps = 9/874 (1%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || |||||||||||||| || || | ||| || Sbjct 59231070 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 59231011 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||||||||| | |||| || || || | | || || | | Sbjct 59231010 CTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 59230951 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | ||| || |||||||| | || ||| | |||||| ||| | ||||||||| | | Sbjct 59230950 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 59230891 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || ||||| | || || |||||| | || || |||| | ||| Sbjct 59230890 AGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 59230831 Query 18909 AGATACAACTCTATCTTCA-TTAGGAGGGTA--TAGAAGATGTTTAAACATCAAACATGC 18965 |||| || ||| |||| || ||| | | | |||| |||||| || Sbjct 59230830 TCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAAAC-TGTAAAG--CAAACACGC 59230774 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||||||||| || | || |||||||| || || ||||| || || ||||| ||||| Sbjct 59230773 AAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGG 59230714 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||| | || | |||||| ||||||||||| ||| || ||| ||||| || || Sbjct 59230713 CATTAACCCCCGTTTTTTCAACCAGAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCC 59230654 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || |||||||| || | | || | | | || || ||||| Sbjct 59230653 TTCAACACAAGCAAAAGCCACCAAACGCTCAGCGAA---GGTTTCGGACCCATCGATCCA 59230597 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 || ||||| | |||||||||| ||||| || |||||||| || | | || | Sbjct 59230596 ACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGGAACAA 59230537 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | | || || | ||| || | || | || | || ||||||||||| || || Sbjct 59230536 TTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGA 59230477 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||| ||||| || || || || || || || || ||| | || || | | ||| || Sbjct 59230476 ATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACCTGGAC 59230417 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 || | || ||| | | | || || ||| || || || || |||||||| Sbjct 59230416 ATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 59230357 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAAT 19445 || | ||||| | || ||||| ||||| | || |||| | | ||| | | | | Sbjct 59230356 GGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTGACGAGT 59230297 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||| | || | ||| |||||||| || ||||| ||||| ||| ||||| || ||||| Sbjct 59230296 ATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACAT 59230237 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATA 19539 | ||| || | |||| || || || || ||| Sbjct 59230236 TTCCCAAATCTGTGGATACTGAATTGGGAACATA 59230203 >seq4 Length=77197300 Score = 105 bits (116), Expect = 8e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | |||||||| |||||||||||||||| | ||||| | || | ||| | Sbjct 61314984 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 61314925 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 |||||| | || ||||| || ||||| || || || || | |||||| | ||| | Sbjct 61314924 ATATGTCTTGATGACAGATTCAATATCGTCTTTGTGGATTCCAACAGATACTCTCATCAG 61314865 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| ||| || ||||| ||||| || || || || ||||| || || |||| | Sbjct 61314864 CATATGTTGTGGCCTTTCCACAATCTTACCATGAATCTTTAAAAGGTAAGACCTTTCAAG 61314805 Query 48779 TGTTTTAAAACCAAAATA 48796 ||||| |||||||| || Sbjct 61314804 GGTTTTGAAACCAAAGTA 61314787 Score = 105 bits (116), Expect = 8e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | |||||||||||||| ||| | || | | ||| || ||||| || Sbjct 61315404 ACCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCC 61315345 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||||||| | || || ||||| ||||||||| ||| |||| | ||| || | || Sbjct 61315344 ATTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGA 61315285 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACA--CCGTTTAAGGGTATCATAA 48536 | ||| || || || || ||| || | |||||| ||| |||| |||||||| Sbjct 61315284 TACACCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCG--TAAGAGTATCATAT 61315227 Query 48537 ATTCCTTCTATACTATCATCTATCAT 48562 || || || || ||||||||| |||| Sbjct 61315226 ATGCCCTCAATGCTATCATCTTTCAT 61315201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108715683680