Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 154 2e-32 >seq2 Length=59803892 Score = 154 bits (170), Expect = 2e-32 Identities = 396/597 (66%), Gaps = 11/597 (2%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| ||||||||||| || |||||||| ||||| || || ||||| || |||||| Sbjct 59230781 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 59230722 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291 ||||| |||||||| || | |||||| | ||| ||||| | || ||| ||| || Sbjct 59230721 AATCCAGGCATTAACCCCCGTTTTTTCAACCAGAATATCG-AACAGAAGCTTCCGCTGAA 59230663 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT--GAACTATAA 37349 |||||| |||||||| ||||| || || | ||| | |||| ||| | || Sbjct 59230662 GAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCGAAGGTTTCGGAC----- 59230608 Query 37350 TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATT 37409 || ||||| | ||| | ||||| || |||||| ||||| |||||| Sbjct 59230607 CCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATT 59230548 Query 37410 GCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469 || || | | | ||||| ||| ||| | || || | || | || ||||| Sbjct 59230547 GCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTG 59230488 Query 37470 TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCA 37529 ||||| || || || ||||| ||||| || || || || ||||| ||| | ||| || Sbjct 59230487 TACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCG 59230428 Query 37530 GATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589 | | || ||||| || | ||||| ||| | ||| || ||| || || || Sbjct 59230427 GCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAG 59230368 Query 37590 GCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTC 37649 || ||||| || |||||||||| | || ||||| |||||| | || || |||| | Sbjct 59230367 GCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCC 59230308 Query 37650 CAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCA 37709 || | | | |||| | || | ||| ||||| || || ||||| ||| ||||| || Sbjct 59230307 CAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCT 59230248 Query 37710 CGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACA-AATCTATC 37765 || ||||| |||||| | || || ||||| || | |||| |||| ||| Sbjct 59230247 TTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACA-TACAGAATCGATC 59230192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316711152480