Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq11 143 2e-29 seq10 131 1e-25 seq7 120 2e-22 seq1 102 6e-17 seq12 100 2e-16 >seq11 Length=66223686 Score = 143 bits (158), Expect = 2e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || |||||||| || |||||||| || | |||| | |||| || | || Sbjct 535041 ATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTG 534982 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| |||| | ||| ||||| || ||||||||||| || |||||||| || Sbjct 534981 TTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTT 534922 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | |||||||| | || || |||||||||| || || ||||| Sbjct 534921 AGCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGT 534862 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 534861 GAGTGTCTTAACAAATATCTGCAT 534838 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | || ||| | || | ||| ||| |||| || | ||| || |||||||| | Sbjct 523101 TTCCACCACGTAGACGGAGGACAAGATGGAGG-TAGACTCGTCTTGGATGTTGTAATCAG 523159 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || ||| | |||| || | || || || ||||| ||||| | ||| ||||| || | Sbjct 523160 CAATTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAG 523219 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || |||||||| || ||||||| | || | ||||||||| | || | Sbjct 523220 GAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCAATAGTGTCAGAGCTCTCGA 523279 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTT--TACAAATATCTGCAT 101469 | |||||||||| || || ||| | | || || |||||||||||||| Sbjct 523280 CCTCAAGAGTGATGGTCTTTCCGATGAGCGTCTTAAAACAAATATCTGCAT 523330 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| ||||| || || | ||| || || || || || || || ||||| || || Sbjct 535976 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 535917 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| || |||| || | ||| ||||| ||||| |||||||||||||| || || ||| Sbjct 535916 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 535857 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || |||||||| ||| ||| ||| | || | || || || | || || Sbjct 535856 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 535797 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | || | || || || || ||||| || ||||| || |||||| Sbjct 535796 TCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCATG 535749 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || ||||| || |||||||| || | |||| | |||| || | || Sbjct 535268 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 535209 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| || || || ||||| ||||| || ||||||||||| Sbjct 535208 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 535149 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | ||||| || | || || |||||||| | || || ||||| Sbjct 535148 GCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGTC 535089 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | |||||| ||||| || ||||| Sbjct 535088 AGAGTTTTAACAAAGATTTGCAT 535066 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | ||| | || ||||| || | ||| || || |||||||| || Sbjct 522427 CCACCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCTGCC 522486 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || || |||| || | ||||| || ||||||||||| | ||| || | || ||| Sbjct 522487 AAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGAGGA 522546 Query 101363 AT-GCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 || ||| |||| ||||| || ||| ||| ||| | | | ||| || || | || || Sbjct 522547 ATACCCTCCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTCAAC 522606 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | ||| | || || || || || || || |||||||| |||||| Sbjct 522607 CTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCATG 522655 >seq10 Length=82529941 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | ||||||||| ||||| || || |||||||||||||| | || || |||| Sbjct 1141372 AACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGCTAATGTCCTTCCATCT 1141431 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| ||||| || ||||||||||| | || || || || || || || ||||| || Sbjct 1141432 TCCAACTGCTTGCCAGCAAATATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCC 1141491 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| || ||||| | || | |||||||| ||||||| ||||| || | || Sbjct 1141492 TGAATCTTGGCCTTTACGTTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTAATAGTC 1141551 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || || || || || ||||| Sbjct 1141552 TTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 1141583 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || || ||||| || ||||||||||||| || | | |||| || Sbjct 1142287 ACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGGGTACGGCCATCTTCA 1142346 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| |||| | ||| || || || ||||||||||| || || || Sbjct 1142347 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 1142406 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | ||||| || ||||||| ||||| |||| || || Sbjct 1142407 ATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTT 1142466 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| |||||||||||||| Sbjct 1142467 CCAGTGAGGGTTTTGACAAATATCTGCAT 1142495 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || |||||||| || | || | | |||| || Sbjct 1141831 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGGCCATCCTCA 1141890 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| ||||| | ||| || || || ||||||||||| || || || Sbjct 1141891 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 1141950 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | ||||| || |||| || ||||| |||| || || Sbjct 1141951 ATCTTGGCTTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 1142010 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| || || || || ||||| Sbjct 1142011 CCTGTCAAAGTCTTCACGAAAATTTGCAT 1142039 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| ||||| || || || |||||||| || | || ||| | || || Sbjct 1142059 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 1142118 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| |||| | || || || || ||||||||||| || || || Sbjct 1142119 AGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 1142178 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || |||| || ||||| |||| || || Sbjct 1142179 ATCTTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 1142238 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||||||| || || || ||||| Sbjct 1142239 CCTGTCAAAGTTTTCACGAAAATTTGCAT 1142267 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | | | ||| | ||||| || |||||||| || || |||||||| | Sbjct 500309 TTCCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAG 500368 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||||| |||| |||||||| || || ||||| |||| | ||| ||||| || | Sbjct 500369 CCAGGGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 500428 Query 101361 GAATGCCTTCTTTATCTTG 101379 | |||||||||||||| || Sbjct 500429 GTATGCCTTCTTTATCCTG 500447 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | ||||| ||||| || ||||| ||||||||||| || | || |||| Sbjct 82034578 AAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCAAGTGTATAATCATCC 82034637 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 | ||||| || || || ||| || | |||||||| | ||||| |||||||| ||| Sbjct 82034638 TTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTTGTCT 82034697 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 | ||| ||| ||| ||| | || | |||| || | | ||| || ||||| | || Sbjct 82034698 TCAATCTTTGCTTTAACATTGTCAATGGTGTTGGAACTCTTCACATCCAGAGTAATGGTC 82034757 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | |||||| ||||| || ||||| Sbjct 82034758 TTTCCAATGAGAGTTTTAACAAAGATTTGCAT 82034789 >seq7 Length=79292169 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| ||||| || || || || |||||||| || || | || | | |||| ||| Sbjct 77535701 ACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGCTAGGGTGCGGCCATCTTCC 77535642 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| |||||||| ||||| | ||| || || || ||||||||||| ||||| || Sbjct 77535641 AACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 77535582 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || |||| || ||||| || | ||| || Sbjct 77535581 ATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTA 77535522 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| || || || |||||||| Sbjct 77535521 CCCGTAAGAGTCTTCACGAAGATCTGCAT 77535493 >seq1 Length=109333515 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || || || || || || ||||| ||||| | ||| | |||| || | || Sbjct 87072285 ATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTG 87072344 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || ||||||||||| || || || ||||| ||||| || || || || || Sbjct 87072345 CTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTT 87072404 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | ||||| || | || || || || |||| ||| || || || Sbjct 87072405 GGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGT 87072464 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || |||||||| Sbjct 87072465 TAGGGTTTTCACGAAGATCTGCAT 87072488 >seq12 Length=83305730 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || || | |||| | |||| || | ||| Sbjct 82214208 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 82214267 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || ||||| ||||| || || || ||||||||||| || |||||||| || Sbjct 82214268 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 82214327 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || || | || | || ||||| || Sbjct 82214328 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTC 82214387 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 82214388 AGGGTCTTCACAAAGATCTGCAT 82214410 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||| || || || ||||| || || | |||| | |||| || | ||| Sbjct 82262366 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGC 82262307 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || ||||| || ||||| | ||| || || || ||||||||||| || || ||||| || Sbjct 82262306 TTTCCTGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTA 82262247 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || || | || | || ||||| ||| Sbjct 82262246 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTT 82262187 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 82262186 AGGGTCTTCACAAAGATCTGCAT 82262164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278342044284