Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq12 100 2e-16 seq7 100 2e-16 seq10 89.7 4e-13 >seq11 Length=66223686 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||||||||| ||| || || ||| || || || ||||| || | ||| | | | Sbjct 535964 CGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCA 535905 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | || ||||| ||||| |||| |||||||| || | ||||| ||||||||| Sbjct 535904 TCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTG 535845 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||||| ||| ||| | | | ||||| ||| ||||||| ||||| Sbjct 535844 TCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATT 535785 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||| || ||||| || ||||| Sbjct 535784 GTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 535750 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 ||| ||||| | |||| || || | ||| || || |||||| || || || || || Sbjct 536208 GTCACCGCCACGGAGCCTCAGGACAAGATGCAGAGTAGACTCTTTCTGGATGTTATAGTC 536149 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG- 48654 | || | || | || || | ||||||||| ||||| || || | ||||||||| | Sbjct 536148 TGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGG 536089 Query 48655 TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCT 48714 ||||| | || |||||||| |||||| ||| ||| | | || || || || Sbjct 536088 TGGGATC-CCTTCCTTGTCCTGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTCT 536030 Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||||||| || || || || || |||| ||| || ||||| ||||||||| Sbjct 536029 CCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCATC 535977 >seq12 Length=83305730 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| |||| ||| |||| | || || | |||| Sbjct 82214208 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 82214267 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 |||||||| || |||| |||||| || || | |||| ||| |||||||| |||||| Sbjct 82214268 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 82214327 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | ||||| | ||| ||||| | ||||| || || |||||| Sbjct 82214328 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTC 82214387 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || ||||| |||||||| Sbjct 82214388 AGGGTCTTCACAAAGATCTGCAT 82214410 >seq7 Length=79292169 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | ||||||||| || || ||| || || || |||||||||| | Sbjct 77535491 CCACCACGTAGACGAAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT 77535432 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || |||| ||||||||||| ||||| || || || | || ||||||| |||| Sbjct 77535431 AGAGTACGTCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGA 77535372 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||| || || | | | || || |||||| Sbjct 77535371 ATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACC 77535312 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || ||||| || | |||||| ||||| ||||||||| Sbjct 77535311 TCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 77535264 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||| || || |||||||| |||| ||| | || Sbjct 77535710 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGCTAGGGTGCGG 77535651 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| |||| | ||| || || | ||||| ||| ||| Sbjct 77535650 CCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 77535591 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || || | | | ||||| || ||||| | ||| Sbjct 77535590 TTATCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTA 77535531 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| | ||| || || || |||||||| Sbjct 77535530 ATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 77535493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || |||||||| |||| || | || | || || | ||||||||| || || Sbjct 77536596 CTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 77536537 Query 48635 TATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 |||| | ||| || || | ||||| | ||||||||||| |||||| ||| ||| Sbjct 77536536 GATCAACCTCTGCTGGTCTGGTGGGATC-CCCTCCTTGTCCTGAATCTTAGCTTTCACAT 77536478 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | || || || ||||||||||| || || || || || ||||| || || | Sbjct 77536477 TGTCGATAGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCA 77536418 Query 48754 CAAAAATCTGCAT 48766 |||| |||||||| Sbjct 77536417 CAAAGATCTGCAT 77536405 >seq10 Length=82529941 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || ||||| || | ||| | | | || || | |||||| || ||||| Sbjct 1141164 CTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAA 1141223 Query 48635 TATCAGTCGCTGTTGATCC-GTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 ||||||| ||| || ||| |||||| ||||||||||| |||||| || ||| Sbjct 1141224 GATCAGTCTCTGCTGGTCCTGTGGGATT-CCCTCCTTGTCCTGAATCTTAGCCTTCACAT 1141282 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | | || || ||||||||||| || || ||||| || ||||| || || | Sbjct 1141283 TGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCA 1141342 Query 48754 CAAAAATCTGCAT 48766 ||||||||||||| Sbjct 1141343 CAAAAATCTGCAT 1141355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937544287876