Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 8e-15 seq3 95.1 3e-14 >seq6 Length=60730942 Score = 96.9 bits (106), Expect = 8e-15 Identities = 178/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365 || ||| ||||||||||| | |||||| | || ||| || || || | |||| || Sbjct 59280625 AGCAGGAAAACTTGATCCTGTGATTGGTAGGGATGAAGAAATTCGAAGAG-TGATTCGGA 59280683 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 |||| || | | || || || ||| ||||| ||| ||||||| || ||||||||||| Sbjct 59280684 TTCTATCGAGGAGGACAAAGAACAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAA 59280741 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483 |||| | ||||| || |||||||| | || | | || ||||||||| | | | Sbjct 59280742 AACAGCTGTAGTTGAAGGGCTAGCACAAAGGATTGTTCGAGGCGATGTTCCAAGTAATTT 59280801 Query 150484 GAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCG 150543 | |||||| | | | ||| ||||||| ||| | | |||||| || ||||| | Sbjct 59280802 GGCTGATGTTAGGGTGATCGCATTGGATATGGGAGCACTCATTGCTGGAACAAAGTACAG 59280861 Query 150544 TGGTGAATTCGAAGA 150558 |||||||| ||||| Sbjct 59280862 AGGTGAATTTGAAGA 59280876 >seq3 Length=75414019 Score = 95.1 bits (104), Expect = 3e-14 Identities = 323/494 (65%), Gaps = 16/494 (3%) Strand=Plus/Minus Query 150310 AGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGATTC 150368 ||| ||||||||||| | |||||| | || ||| || || || |||||| ||||| Sbjct 69447532 AGGAAAACTTGATCCTGTGATTGGTAGGGATGAAGAAATTCGAAGAG-TAATTCGGATTC 69447474 Query 150369 TTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAAC 150426 | || | | || || || ||| ||||| ||| ||||||| || |||||||||||||| Sbjct 69447473 TATCGAGGAGGACAAAGAACAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAAAAC 69447416 Query 150427 ACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAA 150486 | | ||||| || |||||||| | || | | || || |||||| | || Sbjct 69447415 AGCTGTAGTTGAAGGGCTAGCACAAAGGATTGTTCGAGGGGACGTTCCAAGCAATTTGGC 69447356 Query 150487 AGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGG 150546 |||||| || | | ||| ||||||| ||| | | |||||| | ||||| | || Sbjct 69447355 TGATGTTAGGCTTATAGCATTGGATATGGGAGCACTCATTGCTGGAGCAAAGTACAGAGG 69447296 Query 150547 TGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG---AT 150601 |||||| ||||| | || || | | | || | ||| | |||| || | | Sbjct 69447295 TGAATTTGAAGAGAGGTTGAAGGC--TGTTCTGAAGGAAGTGGAAGATGCAGAAGGGAAA 69447238 Query 150602 GTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGT 150661 || ||||| ||||| ||||| ||||| || | ||||||||| |||| | || Sbjct 69447237 GTAATTCTCTTCATTGATGAGATCCACTTGGTTTTAGGTGCTGGTAGGACT---GAAGGA 69447181 Query 150662 TCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATC 150721 || ||||| |||| |||| ||||| || || | || || | | ||| Sbjct 69447180 TCAATGGATGCTGCCAATTTGTTCAAACCGATGCTTGCTAGGGGCCAATTAAGGTGCATT 69447121 Query 150722 GGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGT 150781 |||||||||||| || || || | || | | || |||||||| ||| | | | Sbjct 69447120 GGTGCAACAACCCTGGAAGAGTACAGGAAGTATGTGGAGAAAGATGCTGCATTCGAAAGG 69447061 Query 150782 CGTTTCATGAAGGT 150795 |||||| | |||| Sbjct 69447060 CGTTTCCAGCAGGT 69447047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147590223557976