Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7 107 2e-18 seq4 104 3e-17 >seq7 Length=79292169 Score = 107 bits (118), Expect = 2e-18 Identities = 278/419 (66%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | || || ||| | ||| |||| ||||||| | || | || || || || Sbjct 72655815 GAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCA 72655874 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | ||| || ||||| || || ||| | || || || || Sbjct 72655875 AAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATT 72655934 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTT 175409 || |||||| | ||| ||||| || || | || | || | || || |||||||| Sbjct 72655935 GCAGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTCGTTGAGATGTT 72655993 Query 175410 TGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACC 175469 ||||||||| || ||| | || || ||||| || | | ||| |||||| || Sbjct 72655994 TGTTGGTGTTGGAGCCTCTCGAGTGCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCC 72656053 Query 175470 ATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGT 175527 || ||||| || ||||||| |||||||| || || |||| | | |||| | | Sbjct 72656054 TTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGG 72656113 Query 175528 ATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 | | || |||||| || || ||||| || | || |||||| | || || |||||||| Sbjct 72656114 AGG--AGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGT 72656171 Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || || | ||||| || | ||| ||||||| |||||||| | ||||| ||||| Sbjct 72656172 TTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACTAATCGTGCAGATATTCTTGA 72656230 >seq4 Length=77197300 Score = 104 bits (114), Expect = 3e-17 Identities = 191/280 (68%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || |||||||| | || |||| | || ||||| | ||| ||||| Sbjct 76665129 CCAGGTACTGGGAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTT 76665188 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || ||| Sbjct 76665189 TTCTCTTGTGCAGCATCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTT 76665248 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489 | ||| | ||||| | || ||| || | || |||||||| |||||||||| Sbjct 76665249 AGGGATTTGTTTGAGAAGGC-----AAAGTCGAAAGCGCCTTGTATTGTGTTCATTGATG 76665303 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 |||||||||| || || | |||| | | || ||| | | |||||| ||||| | Sbjct 76665304 AGATTGATGCTGTCGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGG 76665363 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 | || || |||||||| || | || || |||||||| || Sbjct 76665364 AGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTT 76665403 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTC 75190 |||| ||| | || |||||||||| ||||||||||||| | | || ||| | | | Sbjct 61314772 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTTTTAAAGATT 61314831 Query 75191 GATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCAC 75250 |||| | | |||||| ||||| | ||| | ||| | || | | || |||||| Sbjct 61314832 CATGGTAAGATTGTGGAAAGGCCACAACATATGCTGATGAGAGTATCTGTTGGAATCCAC 61314891 Query 75251 GGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT 75310 || || ||||| |||||| | ||||||| | |||||| ||| | ||||| | Sbjct 61314892 AAAGACGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGCTGGTTCACT 61314951 Query 75311 CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| | ||||| || || |||||||| || ||||| || || Sbjct 61314952 CATGCATCTCCAACACTATTTAATGCTGGCACTCCAAGGCCTCA 61314995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569510514560