Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq11 116 7e-21 seq1 102 1e-16 seq10 93.3 8e-14 >seq11 Length=66223686 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| | ||||| || || |||| || | ||||| ||| || || || | Sbjct 535748 CCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGCC 535689 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 ||||| || ||| || | ||| ||||| ||||| || |||||||| || || ||||| Sbjct 535688 AACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGA 535629 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || || ||||| || || | ||| | ||| || ||||| ||| |||||| Sbjct 535628 ATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAACTCTCAACC 535569 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | ||| || || || ||||| | || || |||||||||||||| Sbjct 535568 TCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 535522 Score = 105 bits (116), Expect = 1e-17 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| | ||||| || || |||| || | || ||| ||| || || || | Sbjct 522427 CCACCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCTGCC 522486 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || || ||| || | ||| | ||| ||||| || |||||||| || | ||||| Sbjct 522487 AAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGAGGA 522546 Query 193254 ATTCCTTC-TTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || || ||| ||||| || || | ||| | ||| |||||||| ||| |||||| Sbjct 522547 ATACCCTCCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTCAAC 522606 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | ||| || || || ||||| | || || |||||||||||||| Sbjct 522607 CTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 522654 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || ||||| || | ||||| || || || || || ||||| || ||||| ||| Sbjct 535211 TGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 535152 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| || || || || ||| || || ||||||||||| || || Sbjct 535151 TTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCG 535092 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| ||||| ||||||||| Sbjct 535091 GTCAGAGTTTTAACAAAGATTTGCATT 535065 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||||| |||| |||||| || |||||||| | | || | ||| Sbjct 536189 AGGACAAGATGCAGAGTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCC 536130 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | || || || ||||| || | ||||||||||| || || || ||||| || || Sbjct 536129 TCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCC 536070 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 ||||| || | ||| | ||| ||||||||| || ||| || || | || || || Sbjct 536069 TGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTC 536010 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || ||||| Sbjct 536009 TTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 535978 >seq1 Length=109333515 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || ||||| | || | ||| || || || ||||||| Sbjct 87072261 ACCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 87072320 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || | || |||||||| ||||| || | ||| || || || || Sbjct 87072321 AAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGG 87072380 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || || || || |||| ||| | ||| || || |||||||||||||| Sbjct 87072381 AATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAAC 87072440 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || || || ||||| ||||| || || || ||||| || Sbjct 87072441 CTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 87072491 >seq10 Length=82529941 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | ||||| ||| || |||||| || || | | || | ||| | Sbjct 82034581 ACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCAAGTGTATAATCATCCTTA 82034640 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 ||||||||||| || | | |||||| |||||||| | || ||||||||||| |||| Sbjct 82034641 AATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTTGTCTTCA 82034700 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | ||| | ||| ||| || | |||| || || || ||||| || || || Sbjct 82034701 ATCTTTGCTTTAACATTGTCAATGGTGTTGGAACTCTTCACATCCAGAGTAATGGTCTTT 82034760 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | || ||||| ||||| |||||||| Sbjct 82034761 CCAATGAGAGTTTTAACAAAGATTTGCAT 82034789 Score = 89.7 bits (98), Expect = 9e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 |||||| ||| || ||||||||||| |||||||| | |||||| |||||||||||||| Sbjct 500374 GTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATG 500433 Query 193257 CCTTCTTTATCTTG 193270 ||||||||||| || Sbjct 500434 CCTTCTTTATCCTG 500447 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || |||||||| || || || || || ||||| || || || || Sbjct 1141894 TGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATC 1141953 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | ||| ||| || ||||| ||||| || || || || || || ||| Sbjct 1141954 TTGGCTTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCT 1142013 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || | || || || || ||||||||| Sbjct 1142014 GTCAAAGTCTTCACGAAAATTTGCATT 1142040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654265051840