Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq12 100 4e-16 seq11 96.9 5e-15 seq2 89.7 8e-13 >seq12 Length=83305730 Score = 100 bits (110), Expect = 4e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | || || |||| || || |||||||| ||||| || || Sbjct 82214413 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACTATTACCTTAGAGGTAGAGTCA 82214354 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || || ||| || ||||| || |||||||| || ||||| Sbjct 82214353 TCAGACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCACCAGAC 82214294 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || ||||||||| ||||||||||||||||| ||| | |||| || | || || Sbjct 82214293 CAGCAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACGCTAGCTGACTAC 82214234 Query 156000 AATAT 156004 || || Sbjct 82214233 AACAT 82214229 >seq11 Length=66223686 Score = 96.9 bits (106), Expect = 5e-15 Identities = 132/183 (72%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| |||||||| || || || ||||| || || || || ||| Sbjct 522654 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 522595 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAA-GAAGGCATACCTCCAGAACA 155941 |||| ||| || || ||| || || ||||| ||| || || || |||||| | || Sbjct 522594 GATACTATCAACAATGTTAAAGCAAAGATCCAAGACAAAGGAGGGTATTCCTCCAAACCA 522535 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||| | ||| || |||| || |||||| || || || ||||||| || Sbjct 522534 GCAGAGATTGATATTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTACAA 522475 Query 156002 TAT 156004 || Sbjct 522474 CAT 522472 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || |||||||| || || || ||||| || || || || ||| Sbjct 535522 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 535581 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| || || ||||| || || || || |||||||| || Sbjct 535582 GATACCATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 535641 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| || ||||| || || ||| || || || ||||||| || Sbjct 535642 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAAC 535701 Query 156003 AT 156004 || Sbjct 535702 AT 535703 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || || ||||| || || || ||| Sbjct 535978 ATGCAGATCTTTGTGAAGACTCTGACTGGGAAGACAATCACATTGGAGGTGGAGAGCTCT 536037 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| || ||||| || || ||||| || || ||||| ||| Sbjct 536038 GATACTATTGACAATGTGAAAGCAAAGATACAGGACAAGGAAGGGATCCCACCAGATCAA 536097 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || ||| | | || | |||| ||||| Sbjct 536098 CAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTATAAC 536157 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | || || ||| Sbjct 536158 ATCCAGAAAGAGTCTACTCTGCAT 536181 >seq2 Length=59803892 Score = 89.7 bits (98), Expect = 8e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||||||||||||| ||| |||||||| ||||| || ||||| || || || ||| Sbjct 59230781 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 59230722 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||||| || | |||||| | ||| |||||||| ||| || | ||| Sbjct 59230721 AATCCAGGCATTAACCCCCGTTTTTTCAACCAGAATATCGAACAGAAGCTTCCGCTGAAG 59230662 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA 18318 || || || ||||| || || || || | || | ||||| || Sbjct 59230661 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCGAA 59230618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871890219200