Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq11 122 2e-22 seq10 95.1 2e-14 seq1 95.1 2e-14 seq12 93.3 8e-14 >seq11 Length=66223686 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | || | |||||| ||| || |||||| Sbjct 535067 ATTCCACCACGCAGACGGAGGACAAGATGAAGGGTTGACTCTTTTTGGATGTTGTAATCA 535008 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| || | ||||| ||||||||||| | |||||| ||||| || Sbjct 535007 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 534948 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| ||| |||||| || | || || || Sbjct 534947 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCG 534888 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || || | ||| |||| |||||||||||| Sbjct 534887 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 534838 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || | || | || | || | ||| || ||| || |||||| Sbjct 535295 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 535236 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| || | ||||| ||||||||||| | ||||| || || || Sbjct 535235 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 535176 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| |||||| || | ||||| || Sbjct 535175 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 535116 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| || || || || || | ||||||| ||| || |||||| Sbjct 535115 ACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCATT 535065 Score = 102 bits (112), Expect = 2e-16 Identities = 134/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||||| | |||| | |||| || | ||||| ||||||||||| || || Sbjct 523146 GATGTTGTAATCAGCAATTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAACCT 523205 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| || || || ||||| || ||||| || ||| |||||||||| |||| Sbjct 523206 CTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCAATAGT 523265 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT--AATAAATATC 192531 || || || || || ||||| ||||| || || | | || || || ||||||| Sbjct 523266 GTCAGAGCTCTCGACCTCAAGAGTGATGGTCTTTCCGATGAGCGTCTTAAAACAAATATC 523325 Query 192532 TGCAT 192536 ||||| Sbjct 523326 TGCAT 523330 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||||||||| | || | || | || | || ||| || || ||||| Sbjct 522424 ATGCCACCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCT 522483 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | | |||| || | ||| | |||||||| || |||||||| || | || Sbjct 522484 GCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGA 522543 Query 192427 GGTAT-TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||| |||| ||||| || || ||| ||||| | |||| |||||| || Sbjct 522544 GGAATACCCTCCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTC 522603 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||| || || || || ||||| |||| |||||| ||||| Sbjct 522604 AACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 522654 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| || | || | || | || | ||||| || || ||||| Sbjct 535751 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 535692 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | | |||| || | ||| || ||||||||||| |||||||| || || || Sbjct 535691 GCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 535632 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| ||||| || | |||||| || Sbjct 535631 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAACTCTCA 535572 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||| || || || || ||||| || | |||||| ||||| Sbjct 535571 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 535522 Score = 93.3 bits (102), Expect = 8e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||||| ||| || ||||||| | |||||| |||| || | ||||| |||||||||| Sbjct 522913 CTTTAG-GATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGA 522971 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||||| || || || | || |||| || |||| |||||| ||| |||||| Sbjct 522972 TCAGCCTCTGCTGGTCTGGGGAAATACCTTTCTTGTCTTCAATTTTAGCTTTGACATTAT 523031 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | ||||| || || || ||||| || || || || || | ||||||| || Sbjct 523032 CAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTTAACAA 523091 Query 192527 ATATCTGCATT 192537 | || |||||| Sbjct 523092 AGATTTGCATT 523102 Score = 93.3 bits (102), Expect = 8e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||| | ||||| |||||| ||| ||||| || | | || || |||| || | || Sbjct 536181 ATGCAGAGTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCCTCAAGCTG 536122 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 |||||||||||||| | ||||||||||| ||||| || ||||| || || ||||| || Sbjct 536121 CTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTT 536062 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 ||| ||||| |||| ||| || || || || | || || || || ||||| Sbjct 536061 TGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGT 536002 Query 192513 TAATGTTTTAATAAATATCTGCAT 192536 | || || | ||| |||||||| Sbjct 536001 CAGAGTCTTCACAAAGATCTGCAT 535978 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| | ||| || || | ||| | ||| | ||| || ||| || || || Sbjct 535979 ATCCCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCT 535920 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| || | |||||||||||||||||| || | |||||| || || Sbjct 535919 GCAAGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGG 535860 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| ||||| || | |||||| || Sbjct 535859 GGAATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCA 535800 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||| || || ||||| || || || | ||| || ||||| Sbjct 535799 ACCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 535750 >seq10 Length=82529941 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||| || | ||||| || || | ||| | |||| ||| ||| || ||||| ||||||| Sbjct 82034562 ACCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGA-ATATTGTAATCAG 82034620 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | ||| ||||| | |||||||| ||| || | | |||||| |||||||| | | Sbjct 82034621 CAAGTGTATAATCATCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGG 82034680 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG-ACGATTCT 192486 | ||||||||||| |||| || || ||| ||||| || | | | || ||| Sbjct 82034681 GAATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTCAATGGTGTTGGAACTCTTC- 82034739 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || ||| | | ||||||| ||| || ||||| Sbjct 82034740 ACATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 82034789 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| | |||| |||| ||||||||||| |||||||| || | |||| Sbjct 500356 ATGTTGTAATCAGCCAGGGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTC 500415 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 || |||||||| ||||| ||||||||||| || Sbjct 500416 TGCTGATCAGGAGGTATGCCTTCTTTATCCTG 500447 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | |||||| | || || || | ||| | ||| ||| || || || ||||| Sbjct 1142266 ATTCCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCCTTTTGA-ATGTTGTAATC 1142324 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | || || |||| || | || || || |||||||| | ||||| || || || Sbjct 1142325 GGCGAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGG 1142384 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || || || || || ||| ||||| || | ||||| ||| Sbjct 1142385 GGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCTTTC 1142444 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | |||||||||||| Sbjct 1142445 CACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 1142495 >seq1 Length=109333515 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| || || ||| |||| || | || || || || ||||| |||| | Sbjct 97684329 ATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGC 97684270 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| || ||||| || ||||| || ||| ||| ||||| |||| Sbjct 97684269 TGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTG 97684210 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || |||||| ||||| || || || || || || || | ||||| | || |||||| Sbjct 97684209 TCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTGC 97684150 Query 192535 ATTTT 192539 ||||| Sbjct 97684149 ATTTT 97684145 >seq12 Length=83305730 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || ||||| |||| || | || ||||| || || || |||| Sbjct 82214228 GATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCG 82214287 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || ||||| || ||||| || ||| || ||||| || | Sbjct 82214288 CTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGT 82214347 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || ||||| |||| ||||| || || || || | || || | ||| ||||| Sbjct 82214348 GTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTG 82214407 Query 192534 CATTTT 192539 |||||| Sbjct 82214408 CATTTT 82214413 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || ||||| |||| || | || || || || || || || || Sbjct 82262346 GATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCTGCGAAAATCAACCT 82262287 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || ||||| || || || || ||| || ||||| || | Sbjct 82262286 CTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGT 82262227 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || ||||| |||| ||||| || || || |||| || || | ||| ||||| Sbjct 82262226 GTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTG 82262167 Query 192534 CATTTT 192539 |||||| Sbjct 82262166 CATTTT 82262161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479848636200