Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 2e-15 seq4 98.7 2e-15 seq1 96.9 6e-15 seq12 89.7 9e-13 >seq11 Length=66223686 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || | || | || | || ||| ||| || |||||| Sbjct 522424 ATGCCACCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCT 522483 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || || | ||| | |||||||| || |||||||| |||| || Sbjct 522484 GCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGA 522543 Query 171960 GGTATTCCTTC-TTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || ||| ||||| || || ||| ||||| | ||||||||||| || Sbjct 522544 GGAATACCCTCCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTC 522603 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||| || || || || ||||| |||| ||||| ||||| Sbjct 522604 AACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 522654 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || | || | || | ||||| ||| || |||||| Sbjct 535751 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 535692 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || || | ||| || |||||||| || |||||||| ||||| || Sbjct 535691 GCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 535632 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| ||||| || |||||||| || Sbjct 535631 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAACTCTCA 535572 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||| || || || || ||||| || | ||||| ||||| Sbjct 535571 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 535522 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| |||||||| || | |||||| || || || || || ||||| || ||||| || Sbjct 534983 TGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATC 534924 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| ||| |||||| || || || || || || || ||||| ||||| || || Sbjct 534923 TTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGATGGTCTTTCCG 534864 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| |||| ||||||||||| Sbjct 534863 GTGAGTGTCTTAACAAATATCTGCAT 534838 >seq4 Length=77197300 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 5/144 (3%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || |||||||||||||| | || || ||||| || || ||||||||||| |||||||| Sbjct 55588917 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGGATTCCTTCTTTGTCTTGTATC 55588858 Query 171984 TTATTTTTTACATTAGTTATAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTAC 172041 || || |||| ||||||| |||| |||| ||||| ||||||||||||||| Sbjct 55588857 TTGGCCTTAGCATTGTCGATAGTATTGCTGA--ATTCGACTTCCAGAGTAATGGTTTTA- 55588801 Query 172042 CAGTTAATGTTTTAATGAATATCT 172065 | | || ||||| | |||||||| Sbjct 55588800 CTGGTAGAGTTTTCACGAATATCT 55588777 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/132 (77%), Gaps = 5/132 (4%) Strand=Plus/Minus Query 171943 ATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA 172002 |||| || ||||| || || || |||||||| |||||||| || || |||| | Sbjct 55588780 ATCT-TGCTGGTCTGGAGGGATCCCTTCTTTGTCTTGTATCTTGGCCTTAGCATTGTCGA 55588722 Query 172003 TAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 |||||| |||| |||| ||||| |||||||||||||||| || | ||||| ||||| Sbjct 55588721 TAGTATTGCTGA--ATTCGACTTCCAGAGTAATGGTTTTACTGGTCAGAGTTTTCATGAA 55588664 Query 172061 TATCTGCATTTT 172072 |||||||||||| Sbjct 55588663 TATCTGCATTTT 55588652 >seq1 Length=109333515 Score = 96.9 bits (106), Expect = 6e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| | || || ||| | || || | || || || || || || |||| Sbjct 97684330 AATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCG 97684271 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||||| || ||||| || ||||| || ||| ||| ||||| ||||| Sbjct 97684270 CTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGT 97684211 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || |||||| ||||| || || || || || || || | ||||| | ||| ||||| Sbjct 97684210 GTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTG 97684151 Query 172067 CATTTT 172072 |||||| Sbjct 97684150 CATTTT 97684145 >seq12 Length=83305730 Score = 89.7 bits (98), Expect = 9e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||| || ||||| |||| ||| ||||| ||||| || ||||| || ||||| || Sbjct 82214265 TGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATC 82214324 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || || ||||| || ||||| |||| ||||| || || || Sbjct 82214325 TTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCC 82214384 Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072 || | || || | || ||||||||||| Sbjct 82214385 GTCAGGGTCTTCACAAAGATCTGCATTTT 82214413 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || || || ||||| || ||||| ||||| ||||| || ||||| || || || || Sbjct 82262309 TGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATC 82262250 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || || ||||| || ||||| |||| ||||| || || || Sbjct 82262249 TTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCC 82262190 Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072 |||| || || | || ||||||||||| Sbjct 82262189 GTTAGGGTCTTCACAAAGATCTGCATTTT 82262161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135864229600