Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 113 6e-19 seq1 95.1 1e-13 >seq2 Length=59803892 Score = 113 bits (124), Expect = 6e-19 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| ||||| |||||||| ||||| || || || || | |||| || || ||| Sbjct 59230478 GAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACCTGG 59230419 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| || || |||||||| ||||||||||| |||||| ||| Sbjct 59230418 ACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAA 59230359 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || || || |||| || || | || || | || |||||| |||| Sbjct 59230358 AAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGT-GACG 59230300 Query 869813 -GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 || |||| | ||| || || || || | ||||||| || ||| ||| || ||||| Sbjct 59230299 AGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTA 59230240 Query 869872 CATCTCCCA 869880 ||| ||||| Sbjct 59230239 CATTTCCCA 59230231 >seq1 Length=109333515 Score = 95.1 bits (104), Expect = 1e-13 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| | |||||| |||||| ||||| || || ||||||| || Sbjct 108691508 GCGGCTAACTACCTGAATATCAAGAGTCTGCTTGATCTGACCTGTCAGACTGTGGCAGAC 108691567 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||| || ||| | || ||||||||||| ||||| |||||||||||| ||| Sbjct 108691568 ATGATCAAAGGAAAGACTCCGGAGGAGATCCGAAAGACTTTTAACATCAAGAACG 108691622 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| || |||||||| |||||| ||||| ||| || ||||||| || Sbjct 108688420 GCTGCAAACTATCTGAACATCAAGAGTCTGCTTGATCTGACCTGCCAGACTGTGGCTGAC 108688479 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||| || ||| | || |||| ||| ||||||||||| ||||| ||| Sbjct 108688480 ATGATCAAAGGTAAGACCCCAGAGGCGATTCGCAAGACCTTCAACATAAAG 108688530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138215223804