Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq11 89.7 4e-13 seq10 87.8 1e-12 >seq11 Length=66223686 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325 |||| | ||||| |||||||| || || | ||||| || ||||| || | || || Sbjct 534831 ATTTCAGATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGA 534890 Query 110326 GCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGT 110385 | | || || | | | || ||| |||||| ||||| |||||| | || Sbjct 534891 GAGTTCTGACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCC 534950 Query 110386 GGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGA 110445 ||||| || ||||| || | ||| || |||||||| || |||| | ||||| | || || Sbjct 534951 AGATCAGCAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGA 535010 Query 110446 TTACAACATTCAAAAAGAATCTAC 110469 ||||||||| |||||||| || || Sbjct 535011 TTACAACATCCAAAAAGAGTCAAC 535034 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||||||||| || || || || || || ||||| | || ||| | Sbjct 535522 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 535581 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| ||||| ||||| || || | || || || Sbjct 535582 GATACCATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 535641 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || || || || ||||||| || || |||| ||||||||| Sbjct 535642 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAAC 535701 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 ||||| |||||||| || ||||| Sbjct 535702 ATTCAGAAAGAATCAACCCTGCAC 535725 >seq10 Length=82529941 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| |||||||||||||| | || || || ||||| ||| | || ||| || | Sbjct 1142495 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 1142436 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || ||| ||||| ||||| |||||| | ||| || || Sbjct 1142435 -GACACCATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 1142377 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || || | |||||| || ||||| || |||| | | || | || |||||||| Sbjct 1142376 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAA 1142317 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||| || || || | ||| ||||| | | || || || |||| Sbjct 1142316 CATTCAAAAGGAGTCCACTCTTCACTTGGTGCTCCGTCTTCGTGGTGGAA 1142267 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 || ||||||||| | || ||||| || ||||| |||| ||| || ||||| |||| Sbjct 500444 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAATTGGAA 500385 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTAC 110469 |||| ||||| |||| |||||||||||||| |||||||| || Sbjct 500384 GATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAAC 500341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841539621916