Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq11 113 3e-20 seq7 109 4e-19 seq10 107 1e-18 seq1 104 2e-17 >seq11 Length=66223686 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || || || || | ||| ||| |||||||| || ||||| | Sbjct 535520 CCACCCCTCAGTCGAAGAACAAGATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAGCC 535461 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | |||| || |||||||| ||||| |||||||||| ||||||||| | || Sbjct 535460 AGGGTCCTTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGA 535401 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGG-----ATGCTATCGATTCATTGGCCT 34925 | ||| ||||| || | ||||| || ||| ||| ||||| | || Sbjct 535400 ATCCCTTCCTTATCCTGAATTTTGGCCTTCACGTTGTCAATGGTATCGGAACTTT----- 535346 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || |||| ||| ||||||||||| || || ||||| |||||||||||||| Sbjct 535345 CAACTTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCAT 535294 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||||||||| || || | || ||| ||||| ||||||||||| | ||| |||| | Sbjct 536193 CCTCAGGACAAGATGCAGAGTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCC 536134 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || || ||||| || || ||||| || | || || ||| | || | ||| ||||| Sbjct 536133 ATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTT 536074 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | ||| ||| ||| || | || | ||| | ||| || || | || || Sbjct 536073 GTCCTGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGAT 536014 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || || ||||| |||||||||||||| Sbjct 536013 TGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 535978 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| ||| || || ||||| || || | || | || |||| Sbjct 535049 AGGACAAGATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCT 534990 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || || |||||||||| ||||| ||| | || | || |||||||| Sbjct 534989 TCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCT 534930 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || |||||| || |||| || ||| |||||| |||| || || Sbjct 534929 TGAATCTTAGCTTTGAC--AT--TATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGAT 534874 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| ||||| ||||| ||||| |||||||| Sbjct 534873 GGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 534838 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| ||||| | || ||||| || | || ||||||||| ||||| ||||| | Sbjct 535976 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 535917 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | | |||| || ||||| || || || ||||||| || || |||||| | || Sbjct 535916 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 535857 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || ||| ||| || | || | || ||| || Sbjct 535856 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 535797 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || || ||||| || || | ||||| |||||||| |||||| Sbjct 535796 TCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCATG 535749 >seq7 Length=79292169 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||| ||||| ||||| | ||| |||| | || Sbjct 77536160 AGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCGTCC 77536101 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||||| | ||||||||| | || | ||||||||||| Sbjct 77536100 TCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 77536041 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || |||| || || | || || || | || || Sbjct 77536040 TGGATCTTAGCCTTCAC--AT--TATCAATGGTGTCGGAGCTTTCTACCTCCAAAGTGAT 77535985 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| ||||||||||| ||||| |||||||| Sbjct 77535984 GGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 77535949 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| || | |||| ||||||||| || || ||||| | |||| |||| |||| Sbjct 77535704 AGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGCTAGGGTGCGGCCATCT 77535645 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| || ||||||| | ||||||||| | || | || ||||| || Sbjct 77535644 TCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCC 77535585 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||||| |||| ||| || ||| Sbjct 77535584 TGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTC 77535525 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| || ||||| || ||||||||||| Sbjct 77535524 TTACCCGTAAGAGTCTTCACGAAGATCTGCAT 77535493 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||||||||||| ||| || |||| ||| | ||| |||||| || ||||| ||||||| Sbjct 77536405 TTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCG 77536346 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | |||| |||| || || ||||| || || || |||| | ||||| ||| | | Sbjct 77536345 CCAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGATCTGGGG 77536286 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCC 34924 | | ||||||||||| | || || ||||| || | ||||| || | | Sbjct 77536285 GAATACCCTCCTTGTCTTGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCGGAGCTC 77536230 Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||| ||||| || || || |||||||| |||||||| ||||| Sbjct 77536229 TCAACCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 77536177 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| || || ||||| | ||| |||| |||| Sbjct 77536616 AGGACAAGGTGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCC 77536557 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||||| | ||||||||| | || | |||||||||||| Sbjct 77536556 TCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC 77536497 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||| || || | ||||| ||| ||| || || | || || Sbjct 77536496 TGAATCTTAGCTTTCAC--AT--TGTCGATAGTGTCAGAACTCTCCACCTCCAAAGTGAT 77536441 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || | |||||| |||||||||||||| Sbjct 77536440 GGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 77536405 >seq10 Length=82529941 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| |||||| |||||||| || || | ||| | || |||| Sbjct 1142284 AGCACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGGGTACGGCCATCT 1142343 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || |||||||| | ||||||||| | || | || |||||||| Sbjct 1142344 TCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 1142403 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | || || |||| ||| |||||| Sbjct 1142404 TGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTC 1142463 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| |||||||| || ||||| |||||||| Sbjct 1142464 TTTCCAGTGAGGGTTTTGACAAATATCTGCAT 1142495 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||||||| ||||| || || | ||| | || |||| Sbjct 1141828 AGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGGCCATCC 1141887 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||| ||||||| || ||||||||| | || | || |||||||| Sbjct 1141888 TCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 1141947 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| || | || | || | || || |||| ||| |||||| Sbjct 1141948 TGGATCTTGGCTTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTC 1142007 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| || || || ||||| Sbjct 1142008 TTTCCTGTCAAAGTCTTCACGAAAATTTGCAT 1142039 >seq1 Length=109333515 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| | || | || |||| || || |||||||||||||| Sbjct 87072297 CTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAA 87072356 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || ||||||||| | || | ||| |||||||| | || || |||||| | Sbjct 87072357 AATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGAC--A 87072414 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | | ||||| || | ||| || || | ||| || ||||| ||||| ||||| | Sbjct 87072415 T--TGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTT 87072472 Query 34962 TTACAAAGATCTGCAT 34977 | || ||||||||||| Sbjct 87072473 TCACGAAGATCTGCAT 87072488 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||||||||| || || | ||| | || |||| || || |||||||||||||||||| Sbjct 97684335 TTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATC 97684276 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | ||| |||||||| | || | || |||||||| | || || |||||| | Sbjct 97684275 AATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCA 97684216 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | || | | || || |||| || || ||||| ||||| || || || || ||| Sbjct 97684215 ATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAG 97684156 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 97684155 ATCTGCAT 97684148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692752367428