Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7 120 3e-22 seq10 111 2e-19 seq1 111 2e-19 seq12 109 5e-19 seq11 89.7 5e-13 >seq7 Length=79292169 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || | | ||| | | | |||||||||| Sbjct 77535924 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCA-TCCTCGAGCT 77535866 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || | || ||||||||| || ||||| |||||||| || ||||| Sbjct 77535865 GCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTATCCTGGATCT 77535806 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| ||||||| | ||||| || | |||| ||| || |||| Sbjct 77535805 TAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGG 77535746 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || ||||| |||||||| Sbjct 77535745 TAAGAGTCTTAACGAAGATCTGCAT 77535721 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| | | ||| ||| ||||||||||||||| | Sbjct 77536146 GGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACC-GTCCTCGAGCTGCTTAC 77536088 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || ||||||||| || || || || |||||||| |||||| || Sbjct 77536087 CAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCT 77536028 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||||| | || || || | |||| ||| || ||||| || | Sbjct 77536027 TCACATTATCAATGGTGTCGGAGCTTTCTACCTCCAAAGTGATGGTCTTTCCGGTGAGGG 77535968 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 77535967 TCTTAACAAAAATCTGCAT 77535949 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| || || || ||||| || ||| ||| | | | |||||||| Sbjct 77536382 AAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTGCGGCCA-TCCTCGAG 77536324 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || |||| | || |||||| || || || || || |||||||| ||| Sbjct 77536323 CTGCTTGCCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGAT 77536264 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||||| | ||| || || | ||||| |||||| || Sbjct 77536263 CTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTTCCC 77536204 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || || || ||||| Sbjct 77536203 GGTAAGGGTCTTAACAAAGATTTGCAT 77536177 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||| ||||| |||||||| || | | ||| | | | || || | Sbjct 77535698 AAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGCTAGGGTGCGGCCA-TCTTCCAA 77535640 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | || ||||||||| || || ||||||||||| || ||| Sbjct 77535639 CTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGAT 77535580 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||| | | || || || | ||| | || || || Sbjct 77535579 CTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTACC 77535520 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| |||||||| Sbjct 77535519 CGTAAGAGTCTTCACGAAGATCTGCAT 77535493 >seq10 Length=82529941 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| || || ||||| || |||||||| | | || |||||| ||| Sbjct 1142062 AAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGC 1142121 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || |||| |||||||| || || |||||||||||||| |||| Sbjct 1142122 TGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATC 1142181 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| ||||||| | || || || | ||||| ||| || || Sbjct 1142182 TTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCT 1142241 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| |||||||| ||||| Sbjct 1142242 GTCAAAGTTTTCACGAAAATTTGCAT 1142267 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || ||||||||| | | || | | | || || ||||||||||| Sbjct 1142299 GTGGACTCCTTTTGAATGTTGTAATCGGCGAGGGTACGGCCA-TCTTCAAGCTGCTTGCC 1142357 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| || || |||||||||||||| |||||| || Sbjct 1142358 CGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTT 1142417 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | ||||| || | ||||| ||| || || || || || Sbjct 1142418 GACATTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCAGTGAGGGT 1142477 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || |||||||| Sbjct 1142478 TTTGACAAATATCTGCAT 1142495 Score = 100 bits (110), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || |||||||| | | || | | | ||||| || Sbjct 1141834 AAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGGCCA-TCCTCAAG 1141892 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | | ||||||||| || || |||||||||||||| ||| Sbjct 1141893 CTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGAT 1141952 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | || |||| | | | |||| ||||||| | || || || | ||||| ||| || | Sbjct 1141953 C-TTGGCTTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTC 1142011 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||| || |||||||| ||||| Sbjct 1142012 CTGTCAAAGTCTTCACGAAAATTTGCAT 1142039 >seq1 Length=109333515 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | | || ||| | ||||| |||||||| || Sbjct 87072292 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCA-TCCTCAAGCTGCTTTCC 87072350 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||||||||| || || || ||||||||||| |||||| || Sbjct 87072351 GGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTT 87072410 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | ||| || || | ||||| || || || || || || Sbjct 87072411 GACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGT 87072470 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 87072471 TTTCACGAAGATCTGCAT 87072488 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 ||||||| || |||||||| | | || | | | || ||||||||||| || ||| | Sbjct 97684337 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCA-TCTTCGAGCTGCTTTCCGGCGAAG 97684279 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || | ||||||||||| || || || ||||||||||| ||||| |||| | Sbjct 97684278 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 97684219 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| |||||| | | || || || | |||| || || || || |||||||| ||| Sbjct 97684218 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 97684159 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 97684158 AAGATCTGCAT 97684148 >seq12 Length=83305730 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | | ||| | | | |||||||||||||| | Sbjct 82214213 GGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCA-TCCTCGAGCTGCTTAC 82214271 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| || || |||||||||||||| ||||| || Sbjct 82214272 CGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCT 82214331 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | ||| | || ||||| ||||| | Sbjct 82214332 TAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGG 82214391 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 82214392 TCTTCACAAAGATCTGCAT 82214410 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || ||||| || | | ||| | | | ||||| |||||||| | Sbjct 82262361 GGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCA-TCCTCAAGCTGCTTTC 82262303 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | || ||||||||| || || |||||||||||||| ||||| || Sbjct 82262302 CTGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCT 82262243 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | ||| | || ||||| || || | Sbjct 82262242 TAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGG 82262183 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 82262182 TCTTCACAAAGATCTGCAT 82262164 >seq11 Length=66223686 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || || || || | | ||| | | | ||||| |||||||| || Sbjct 536174 GTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCA-TCCTCAAGCTGCTTACC 536116 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||| || || || ||||| ||||||||||| |||||| || Sbjct 536115 AGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTT 536056 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | | |||||| || | |||| || || || |||||||| Sbjct 536055 CACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGT 535996 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 535995 CTTCACAAAGATCTGCAT 535978 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||||| ||| ||||||||||| |||||||| || ||| || ||||| || || Sbjct 535497 ATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAGCCAGGGTCCTTCCATCCTCAAGTTG 535438 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || || | ||||||||| ||||| || |||||||| || ||| || Sbjct 535437 CTTGCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGAATCCCTTCCTTATC-CTGAATTT 535379 Query 133577 TTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | | ||| | | |||| || |||| || || || | ||||| ||| || || | Sbjct 535378 TGGCCTTCACGTTGTCAATGGTATCGGAACTTTCAACTTCAAGGGTGATGGTCTTTCCAG 535319 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || |||||||| Sbjct 535318 TAAGTGTCTTGACAAAGATCTGCAT 535294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420727486880