Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 120 2e-22 seq10 116 2e-21 seq11 100 2e-16 seq7 89.7 3e-13 seq12 84.2 1e-11 >seq1 Length=109333515 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||| | ||| |||||| ||| || || |||||||| |||| Sbjct 87072260 CACCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 87072319 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || | || || | || |||||||| ||||||||||||||||| ||| | | Sbjct 87072320 CAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGG 87072379 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || | || |||| ||| | ||||||| || || Sbjct 87072380 GAATCCCTTCCTTGTCCTGGATCTT-GGCTTTGACATTGTCGATGGTGTCGGAAGACTCA 87072438 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||||| || || |||| ||||| || ||||||||||| Sbjct 87072439 ACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 87072488 Score = 116 bits (128), Expect = 2e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || ||||||||||| | || || ||| | || || | || |||||||| || | Sbjct 97684337 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 97684278 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 |||| |||||||| || | || | |||||| ||||| ||| || | || |||| | Sbjct 97684277 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTT-AGCTTTGACATTG 97684219 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | |||||||| ||||| || |||| ||||||||| || || || | ||||| || Sbjct 97684218 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 97684159 Query 33739 AAGATCTGCAT 33749 ||||||||||| Sbjct 97684158 AAGATCTGCAT 97684148 >seq10 Length=82529941 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | ||||| || || || ||| || || ||||||||||| | Sbjct 1141585 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1141644 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || ||||||||||| ||||| | |||||| ||| | || Sbjct 1141645 AGGGTACGACCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 1141704 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| |||||| | | ||||| ||| | |||||| |||||| Sbjct 1141705 ATACCTTCTTTGTCCTGAATTTT-AGCCTTAACATTGTCAATGGTGTCAGAACTTTCCAC 1141763 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || || || || |||||||| ||||| Sbjct 1141764 CTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1141811 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || |||||| ||| ||||| ||||||||||||| | Sbjct 1142269 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCG 1142328 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || || || ||||| |||| | |||||| ||| | || Sbjct 1142329 AGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 1142388 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||| ||||| || || | || |||| ||| | |||||| ||| ||| Sbjct 1142389 ATGCCTTCCTTGTCCTGGATCTT-GGCTTTGACATTGTCAATGGTGTCTGAGCT---TTC 1142444 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| |||| ||||| || || || || | ||||| ||||| |||||||| Sbjct 1142445 CACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 1142495 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || || ||| || || ||||||||||| | Sbjct 1141813 CCACCGCGAAGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1141872 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || ||||||||||| ||||| | |||||| ||| | || Sbjct 1141873 AGGGTCCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGA 1141932 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | || ||||| ||| | ||||||| ||| || Sbjct 1141933 ATGCCTTCCTTGTCCTGGATCTT-GGCTTTAACATTGTCAATGGTGTCGGAGCTTTCAAC 1141991 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || ||||| || || || || || || ||||| Sbjct 1141992 CTCAAGGGTGATGGTCTTTCCTGTCAAAGTCTTCACGAAAATTTGCAT 1142039 >seq11 Length=66223686 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| ||||||| ||| ||||| ||| || || |||||||| || | Sbjct 535976 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 535917 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || | |||||| || ||||| ||||||||||| || ||| | || Sbjct 535916 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 535857 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||| || ||||| ||| || || || |||| ||| | ||| || ||| || Sbjct 535856 ATACCCTCCTTGTCTTGAATCTT-TGCTTTCACATTGTCAATGGTATC---TGAACTCTC 535801 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || || || || || |||||||| ||||| Sbjct 535800 AACCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 535750 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | || | ||| || || ||||||||| ||||||||||| | Sbjct 535064 CCACCACGCAGACGGAGGACAAGATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 535005 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || || | ||||| || ||||| |||| | |||||||||| | || Sbjct 535004 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 534945 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| || | || |||| || | |||||| || || Sbjct 534944 ATGCCTTCCTTGTCTTGAATCTT-AGCTTTGACATTATCAATGGTGTCAGAACTCTCGAC 534886 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || ||||| |||||||| Sbjct 534885 CTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 534838 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| ||||| ||||||||||| | ||||| || | || || | ||| Sbjct 535268 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 535209 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| |||| | |||||| ||| | || | |||||| ||||| |||||| Sbjct 535208 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTT- 535150 Query 33667 TGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722 | || |||| || | |||||| ||| || || |||| || || || || || Sbjct 535149 AGCTTTGACATTATCGATGGTGTCTGAGCT---CTCGACCTCAAGAGTTATAGTCTTCCC 535093 Query 33723 TGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| |||||||| ||||| Sbjct 535092 GGTCAGAGTTTTAACAAAGATTTGCAT 535066 >seq7 Length=79292169 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || ||| ||| || || || ||||| || | Sbjct 77535720 ACCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGC 77535661 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || ||||| || ||||| ||||| ||||| | |||||| ||| | || Sbjct 77535660 TAGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGG 77535601 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGA---TT 33697 | ||||| || || || || || | | | |||| |||||| ||| || Sbjct 77535600 AATGCCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTC---TGAGCTTT 77535545 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| || ||||| ||||| || | || || || |||||||||||| Sbjct 77535544 CGACCTCAAGGGTAATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCATA 77535492 >seq12 Length=83305730 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | || || ||| ||| || || |||||||| || | Sbjct 82214182 CACCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 82214241 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || | || || | || || ||||| |||||||| |||||||| ||| | | Sbjct 82214242 CTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTG 82214301 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | ||||| ||||| ||| || || ||||| |||| |||||| ||| || Sbjct 82214302 GAATGCCTTCCTTGTCTTGAATCTTAGCCTT-AACATTGTCAATGGTGTCTGATGACTCT 82214360 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || || | || || |||||||||||||| Sbjct 82214361 ACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 82214410 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||| | || || ||| || || || |||||||| || | Sbjct 82262392 CACCACCACGGAGACGAAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 82262333 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || | || || | || ||||| || |||||||| | |||||| ||| | | Sbjct 82262332 CTAGCGTTCGGCCATCCTCAAGCTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGTG 82262273 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | ||||| ||||| ||| || || ||||| |||| |||||| ||| || Sbjct 82262272 GAATGCCTTCCTTGTCCTGAATCTTAGCCTT-AACATTGTCAATGGTGTCTGATGACTCT 82262214 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || |||| || || |||||||||||||| Sbjct 82262213 ACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTGCAT 82262164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703951927040