Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1 136 4e-27 seq7 132 5e-26 seq11 122 9e-23 seq10 118 1e-21 seq12 116 4e-21 seq4 95.1 1e-14 >seq1 Length=109333515 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||| || || ||||| ||||| || |||||||||||| || Sbjct 87072262 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 87072321 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || ||||| || || || ||||||||||||||||| || || || Sbjct 87072322 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGA 87072381 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || |||||| ||| | |||||||| || || || Sbjct 87072382 ATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 87072441 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || || || || || |||| ||||| ||||| || ||||| || Sbjct 87072442 TCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 87072491 >seq7 Length=79292169 Score = 132 bits (146), Expect = 5e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||| || || | | ||| | ||| || || || |||||||| ||||||||||| | Sbjct 77536405 TTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCG 77536346 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 |||| | || | || |||||||| ||||| ||||||||||| | ||||||||| || Sbjct 77536345 CCAAAG-TGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGATCTGGG 77536287 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || || || ||||| || || ||||| ||| | |||||||| || Sbjct 77536286 GGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCA 77536227 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || |||||||| ||||| | || ||||| || |||||||| Sbjct 77536226 ACCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 77536177 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || || || || ||||| ||||| || ||||||||||| | Sbjct 77535947 CCACCACGGAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 77535888 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || |||||||| || || || || ||||| | |||||| || || || Sbjct 77535887 AGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGG 77535828 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || || || ||| | |||||||| |||||| Sbjct 77535827 ATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCCACC 77535768 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| ||||| || ||||| | ||| |||||||| || ||||| Sbjct 77535767 TCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 77535721 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| || |||||||||||| ||| |||| || ||| ||| Sbjct 77536157 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCGTCCTCG 77536098 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || || ||||| | |||||| || || || || || || || || || Sbjct 77536097 AGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 77536038 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | |||||||| ||| || || | ||| ||||| || Sbjct 77536037 ATCTTAGCCTTCACATTATCAATGGTGTCGGAGCTTTCTACCTCCAAAGTGATGGTCTTT 77535978 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || ||||| ||||| ||||| Sbjct 77535977 CCGGTGAGGGTCTTAACAAAAATCTGCAT 77535949 >seq11 Length=66223686 Score = 122 bits (134), Expect = 9e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| |||||||| |||||||| || ||| || | || || Sbjct 535274 ACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCA 535215 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 |||||||| || ||||| |||| | |||||| || || || || ||||| || |||||| Sbjct 535214 AGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGA 535155 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| |||||| || | ||||| || || || || ||||| || || || Sbjct 535154 ATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTC 535095 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| | ||||||||| || ||||||||| Sbjct 535094 CCGGTCAGAGTTTTAACAAAGATTTGCATT 535065 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | |||||||| || || || || || ||||| || ||||||||||| || Sbjct 535976 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 535917 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || ||||| || ||||| ||||||||||| || || || || Sbjct 535916 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 535857 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| ||| ||| || ||| | || || || || || Sbjct 535856 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 535797 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || || || ||||| || || || |||||||| Sbjct 535796 TCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 535750 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || || | || ||||| || || ||||| || ||||||||||| || ||| Sbjct 535748 CCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGCC 535689 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 |||| | | || || || || || || ||||| ||||| | |||||| || || || Sbjct 535688 AACGTCCTTCCA-TCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGG 535630 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || ||||| || ||| ||| || ||| | || || || || || Sbjct 535629 AATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAACTCTCAAC 535570 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||| || || || || || || || || || |||||||| Sbjct 535569 CTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 535522 >seq10 Length=82529941 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || || | ||| | ||| || || |||||||| || |||||||| || Sbjct 1142039 TTCCACCACGAAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAG 1142098 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| ||| || ||||| ||||| ||||| |||| | ||||| || || | Sbjct 1142099 CAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGG 1142158 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || || || ||| | |||||||| ||| | Sbjct 1142159 GAATGCCTTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAA 1142218 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || || || |||||||| ||||||||||||||| Sbjct 1142219 CCTCAAGGGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCATT 1142268 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || || | ||| | ||| || ||||| ||||||||||||||||| ||| Sbjct 1142267 TTCCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGG 1142326 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | ||| | || || ||||| ||||| ||||| |||| | |||||| || || | Sbjct 1142327 CGAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGG 1142386 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || |||||| ||| | ||||| || ||||| Sbjct 1142387 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCTTTCCA 1142446 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| || || || | ||||| || || || ||||| Sbjct 1142447 CCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 1142495 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || ||||| || |||||||| || ||| ||| | || || ||||| Sbjct 1141836 GTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGGCCATCCTCAAGCTG 1141895 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||| ||||| | |||||| || || || |||||||| || || || || || Sbjct 1141896 CTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 1141955 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || ||| | |||||||| ||| || || || || ||||| || || || Sbjct 1141956 GGCTTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCTGT 1142015 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||||||||||||| Sbjct 1142016 CAAAGTCTTCACGAAAATTTGCATT 1142040 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| ||||| | || || ||||| || || ||||| || ||||||||||| || Sbjct 500309 TTCCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAG 500368 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | ||| | || || | ||||| || |||||||||| | ||||||||| || | Sbjct 500369 CCAGGGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 500428 Query 134605 GTATGCCTTCTTTTTCTTG 134623 ||||||||||||| || || Sbjct 500429 GTATGCCTTCTTTATCCTG 500447 >seq12 Length=83305730 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| || | ||| ||||| || ||||||||||| || ||||||||||| || Sbjct 82262390 CCACCACGGAGACGAAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 82262331 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | | | || || ||||| || ||||| |||||||| | |||||| || || || Sbjct 82262330 AGCGTTCGGCCA-TCCTCAAGCTGCTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGTGG 82262272 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || || ||||| || || || ||| | ||||| || || || || Sbjct 82262271 AATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 82262212 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || | ||||| || || || |||| || || || || || |||||||| Sbjct 82262211 CTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTGCATTTT 82262161 Score = 113 bits (124), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| || | || ||||| || ||||| ||||| || ||||||||||| || Sbjct 82214184 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 82214243 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | | | || |||||||| || || || |||||||| |||||||| || || || Sbjct 82214244 AGCGTTCGGCCA-TCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGG 82214302 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || |||||||| || || || ||| | ||||| || || || || Sbjct 82214303 AATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 82214362 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || | ||||| || || || || | || || || || || |||||||| Sbjct 82214363 CTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 82214413 >seq4 Length=77197300 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTGAGAGTCGT 134562 ||| || ||||| || |||| || || ||| |||||| | |||| |||| | || | Sbjct 55588981 CACTAGATGTAGAGTTGATTTTTTCTGGATGCTGTAGTACACCAA-GGTGCGGCCATCCT 55588923 Query 134563 CGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTT 134622 ||||||| || || |||||||||| | ||||| || || || || |||||||| |||| Sbjct 55588922 CGAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGGATTCCTTCTTTGTCTT 55588863 Query 134623 GAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTT 134682 | || || || | ||| | || | | |||| || || ||||||||||||| Sbjct 55588862 GTATCTTGGCCTTAGCATTGTCGATAGTATTGCTGAATTCGACTTCCAGAGTAATGGTTT 55588803 Query 134683 TACCGGTTAAAGTTTTAACGAAAAT-TTGC 134711 ||| || || |||||| ||||| || |||| Sbjct 55588802 TACTGG-TAGAGTTTTCACGAATATCTTGC 55588774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398324190240