Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 122 1e-22 >seq4 Length=77197300 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | |||| ||||||| |||| | || | |||||||||||||| ||| Sbjct 4559756 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCCA 4559815 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||||||||| || | | |||||||| | |||| Sbjct 4559816 TTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGAT 4559875 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| || | |||||| || | ||||||||||| Sbjct 4559876 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 4559935 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||| ||| ||||| | || || |||||| Sbjct 4559936 CCCTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 4559977 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | ||||||||||| | |||| | || | |||||| |||| ||| ||| Sbjct 61315403 CCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCCA 61315344 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | || ||||||||| ||||||||| || | || || || || | |||| Sbjct 61315343 TTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGAT 61315284 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||| || || ||| || | |||||| | | || |||||||| Sbjct 61315283 ACACCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCGTAAGAGTATCATATATG 61315224 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| ||||| | || || |||||| Sbjct 61315223 CCCTCAATGCTATCATCTTTCATGCATATCAGGAAGCAGCTA 61315182 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || |||||||||| ||| |||||||| ||||||||||| || ||| | || || Sbjct 61314984 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 61314925 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||| | || | ||||| ||||| | || ||||| | | || | ||||| Sbjct 61314924 ATATGTCTTGATGACAGATTCAATATCGTCTTTGTGGATTCCAACAGATACTCTCATCAG 61314865 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 |||||| || || | ||| || | ||| || || || || ||||| || |||| || Sbjct 61314864 CATATGTTGTGGCCTTTCCACAATCTTACCATGAATCTTTAAAAGGTAAGACCTTTCAAG 61314805 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||||||||| ||||| || || Sbjct 61314804 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATGAT 61314757 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | |||||||| || |||||||||||| | | ||| | || || Sbjct 4560077 AGTTCCAGCATTAAAAAGAGTAGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 4560136 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || || | || || ||||| ||||| || || || |||| | ||| | ||||| Sbjct 4560137 ATAAGTCTTGATGGCAGATTCAATATCTTTCTTGTGTATCCCTACAGAGACTCTCATCAG 4560196 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| ||| || || || || ||||| ||| ||||| Sbjct 4560197 CATGTGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGATCGCTCCAG 4560256 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || || || || || Sbjct 4560257 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 4560304 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/174 (73%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||||||||||||| | | || ||| || || || || ||||| ||| ||||||| Sbjct 61315916 CTCTTTTTCATATTTTCTGTACAGCTTCTCAAAATCTTCACCCCAGCAATCTGCCAATCC 61315857 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--AACTCGTTTCATA 69606 |||| ||||||||||| | ||| ||||| | ||| | ||| |||| || |||| Sbjct 61315856 AGGAGCCTCATTTGGACAAAACAAAGACCATATCCCAT--TGCTTTGGACTCTTTGCATA 61315799 Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTC 69659 || ||||| || | ||||||||| ||| || ||||||| | | ||| ||||| Sbjct 61315798 AAAAGATCTGGCACCCAAAGAGC-ATAGAAAAGATCTCGTGCCCGATTCTCTTC 61315746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908696963680