Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 109 7e-19 seq7 107 2e-18 seq2 86.0 8e-12 >seq4 Length=77197300 Score = 109 bits (120), Expect = 7e-19 Identities = 192/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || || |||||||||||| | Sbjct 76665403 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 76665344 Query 11600 ATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | ||| |||| | |||| | || || |||||||||||||||||||| |||||||| Sbjct 76665343 CCAAGACCTGCACCTCTTTGCCTTCCGACAGCATCAATCTCATCAATGAACACAATACAA 76665284 Query 11660 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || | || ||| || | ||||| | ||| | ||| || || ||||||| Sbjct 76665283 GGCGCTTTCGACTTT-----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACAC 76665229 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 | ||||||| ||| ||||| | || || | || || ||||| ||| | |||| Sbjct 76665228 CCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCCTCAC 76665169 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | |||| || | |||||||| || |||||||| Sbjct 76665168 CAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 76665129 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || |||||||| || || ||||| | ||| ||| ||||| | ||| Sbjct 61314995 TGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 61314936 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||||||| | |||||| ||||| || || |||||| || | | Sbjct 61314935 GACATCAAATGATATGTCTTGATGACAGATTCAATATCGTCTTTGTGGATTCCAACAGAT 61314876 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 112120 || | ||| | ||| | ||||| |||||| | | |||| | | | ||| || Sbjct 61314875 ACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTACCATGAATCTTTAAAAGGTAA 61314816 Query 112121 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | | ||||||||||||| |||||||||| || | ||| |||| Sbjct 61314815 GACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 61314772 >seq7 Length=79292169 Score = 107 bits (118), Expect = 2e-18 Identities = 278/419 (66%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | |||||||| ||||||| ||| | || ||||| | || || Sbjct 72656230 TCAAGAATATCTGCACGATTAGTTGCCGCAACAACTATTATACCAGTATTTCCTTCGAAA 72656171 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | || ||| || | || ||||| || ||||||||| || | | Sbjct 72656170 CCATCCATTTCAGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTTCCT--CCTC 72656113 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| || || |||||||| ||||||| || ||||| || | Sbjct 72656112 CAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAAG 72656053 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | |||||| ||| | | || ||||| || || | ||| || |||||||||| Sbjct 72656052 GAGCATTTTCCTTGGCCTTCTTGAAAAGATCACGCACTCGAGAGGCTCCAACACCAACAA 72655993 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779 ||||||| || || | || | || | || || ||||| ||| | |||||| || Sbjct 72655992 ACATCTCAACGAATTCTGAACCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCTGCA 72655934 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || || || || | ||| || || ||||| || ||| | ||||| | ||| Sbjct 72655933 ATTGCCTTTGCTAGCAAGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGAACACCTTTT 72655874 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || || || | || | ||||||| |||| ||| | ||| || || | ||| Sbjct 72655873 GGAATACGAGCCCCTACTGCAGTAAATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 72655815 >seq2 Length=59803892 Score = 86.0 bits (94), Expect = 8e-12 Identities = 150/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| || |||| ||||| | |||||||||||| || || Sbjct 59230775 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 59230716 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||||| || |||||||| | || | ||||| ||| |||||| || Sbjct 59230715 GGCATTAACCCCCGTTTTTTCAACCAGAATATCGAACAGAAGCTTCCGCTGAAGAAAATC 59230656 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 || || ||||| ||||| || | | || || ||||||| ||| |||| | | Sbjct 59230655 CCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCGAAGGTTTCGGAC---CCATCGATC 59230599 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 122876 || | ||||||||||||||||| |||| ||| || Sbjct 59230598 CAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGG 59230561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031905795200