Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 4e-15 seq2 96.9 4e-15 seq7 82.4 9e-11 >seq4 Length=77197300 Score = 96.9 bits (106), Expect = 4e-15 Identities = 189/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||| |||||||| || ||||| || || || || | |||||||| || Sbjct 76665403 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 76665344 Query 14213 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 | ||| |||| | |||| | ||||| || ||||| ||||| ||||| || ||||| Sbjct 76665343 CCAAGACCTGCACCTCTTTGCCTTCCGACAGCATCAATCTCATCAATGAACACAATACAA 76665284 Query 14273 GGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 || | ||| || || ||||| | ||| | ||||| || || |||||||| Sbjct 76665283 GGC-GCTTTCGACTTTGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACACCCAC 76665225 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGC 14391 ||||| ||| ||||| | | || | ||| || || || || || ||||| || Sbjct 76665224 AAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCCTCACCAGC 76665165 Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | |||| || | ||||||||||| || |||||| Sbjct 76665164 TACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGGT 76665128 >seq2 Length=59803892 Score = 96.9 bits (106), Expect = 4e-15 Identities = 222/332 (67%), Gaps = 12/332 (4%) Strand=Plus/Plus Query 11905 CGGCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTA 11964 |||| |||||| | | ||||||||| ||| | || || | || |||||| ||| | Sbjct 51387540 CGGCGCATTGGTACACGGTGAATTACCGGGAAGCGTACGGGATATTCGCGTGCAATGGGA 51387599 Query 11965 TTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC- 12023 ||||||||||||||||||| || ||||| || | |||||||||| | |||||| ||| Sbjct 51387600 TTCTCTTCAACCACGAGTCTCCTCGTCGGGGTGAGAATTTCGTGACGAGGAAGATTACCC 51387659 Query 12024 -----GATGGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACC 12078 | || | | | |||||| ||| |||| || | || ||||| || Sbjct 51387660 GGGCTGTAGGGAGGATAAAAATCG-GGC--TACAGAGCAAGGTTTTT---TTGGGTAATT 51387713 Query 12079 TCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTAC 12138 | | || ||||||||||| ||| |||||||| ||||| |||||| | | | Sbjct 51387714 TACAGGCGTCAAGGGACTGGGGCTTTGCTGGAGACTATGTAGAAGCAATGTGGATGATGC 51387773 Query 12139 TTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGG 12198 | || ||||| | | ||||| || || || || |||| ||| |||| | || || Sbjct 51387774 TGCAGCAAGAGAAACCAGACGACTACGTTGTGGCAACGGAGGATTCACATACTGTAGAGG 51387833 Query 12199 AGTTCGTTGAGTTGTGCTTTAGGGAAGTTGGA 12230 |||| | || | |||||| | |||||| Sbjct 51387834 AGTTTCTAGAAGTAGCATTTAGGTACGTTGGA 51387865 >seq7 Length=79292169 Score = 82.4 bits (90), Expect = 9e-11 Identities = 193/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | || | || |||||| ||||| || || || ||||| Sbjct 72656261 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTAGTTGCCGC 72656202 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 | || | || || || | || || |||||||| |||||||| ||||| || | Sbjct 72656201 AACAACTATTATACCAGTATTTCCTTCGAAACCATCCATTTCAGTCAATAGTTGGTTCAG 72656142 Query 14185 GGTTTGTTCGCGTTCATCATT--CGCAGGCA-TACCACCCGCACTGCGTTGCTTACCGAC 14241 ||| ||||| | ||||||||| | | || | ||| | | || |||| || || Sbjct 72656141 GGTCTGTTCCCTTTCATCATTTCCTCCTCCAATTCCAGTCCCTCT---TTGCCGCCCAAC 72656085 Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAA-CTTCAAAGA 14300 || ||||||||||| | || || || || || |||||| ||| ||| ||| | Sbjct 72656084 AGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA-A 72656026 Query 14301 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 ||| ||||||| ||| || ||||| ||||||||||| || || Sbjct 72656025 GATCACGCACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAA 72655980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435107234720