Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 125 8e-24 seq4 114 2e-20 >seq7 Length=79292169 Score = 125 bits (138), Expect = 8e-24 Identities = 304/449 (68%), Gaps = 16/449 (4%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 72656261 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTAGTTGCCGC 72656202 Query 9586 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 72656201 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 72656144 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 72656143 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 72656086 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 9760 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 72656085 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA- 72656027 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || ||| || ||||||||||||||||| || || | || | ||| Sbjct 72656026 AGATCACGCACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA 72655967 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 72655966 -ATTGAGAAAAATGGAACACCCGCTTCACCTGCAATTGCCTTTGCTAGCAAGGTTTTCCC 72655908 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 9938 ||||| || ||| | || || ||||| ||||| | | ||| || | ||| Sbjct 72655907 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAA--TACGAGCCCCTACTGCAGTA 72655850 Query 9939 -ATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 |||||||||||| ||| | ||| || || Sbjct 72655849 AATCTCTCAGGTTTCTTCAAAAATTCTAC 72655821 >seq4 Length=77197300 Score = 114 bits (126), Expect = 2e-20 Identities = 196/279 (70%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || |||||||| || |||||||| || |||| |||||||| | Sbjct 76665403 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 76665344 Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | ||| |||| | |||| |||| || |||||||||||||||||||| || || || Sbjct 76665343 CCAAGACCTGCACCTCTTTGCCTTCCGACAGCATCAATCTCATCAATGAACACAATACAA 76665284 Query 9734 GGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789 || ||||| | || ||||| | ||||| || || || | || |||||||| Sbjct 76665283 GG--CGCTTTCGACTTTGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCTCCCACACC 76665228 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||||| ||| ||||| | || || | ||| || || || ||| || ||||| Sbjct 76665227 CACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCCTCACC 76665168 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || | |||| || | ||| ||||| || |||||||| Sbjct 76665167 AGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 76665129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 104197 ||||||| |||| || ||| |||||| ||||||||||||| | | || ||| | | Sbjct 61314769 AGAGACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTTTTAAAG 61314828 Query 104198 CTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATT 104257 | ||||| | |||||| ||||| | ||| | ||| | || | | || || Sbjct 61314829 ATTCATGGTAAGATTGTGGAAAGGCCACAACATATGCTGATGAGAGTATCTGTTGGAATC 61314888 Query 104258 CATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 104317 || || || ||||| |||||| | ||||||| | |||||| ||| | |||| Sbjct 61314889 CACAAAGACGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGCTGGTTC 61314948 Query 104318 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 | ||| ||| | ||||| || || |||||||| || ||||| || ||| Sbjct 61314949 ACTCATGCATCTCCAACACTATTTAATGCTGGCACTCCAAGGCCTCAA 61314996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260712510880