Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 113 5e-20 seq10 82.4 8e-11 seq3 82.4 8e-11 >seq2 Length=59803892 Score = 113 bits (124), Expect = 5e-20 Identities = 287/424 (68%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| | ||||| ||||| || || ||||| || || | | |||||||| | || Sbjct 59230763 TGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGCATTAACCCC 59230704 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 || || |||||||| || || | ||||||| || |||||||| || ||||| ||||| Sbjct 59230703 CGTTTTTTCAACCAGAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCTTCAACACAA 59230644 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAG--TC-ATCCAAGTCTGAGCC 74939 ||||| || || | || | ||||| | | ||||| || |||||| | ||| Sbjct 59230643 GCAAAAGCCACCAAACGCTCAGCGAAGGTT---TCGGACCCATCGATCCAACGAAGGGCC 59230587 Query 74940 CATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGC-CT 74997 |||| || || | ||| | | || |||| || || || || |||| | |||| || Sbjct 59230586 CATTTCGCCTT-CTTTTCAACACAAGGGATTGTCTCAATTGCACGGAACAAT-TTGCTCT 59230529 Query 74998 TCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCG 75057 | || || | |||||||| | | || | || | |||| |||| ||||| || Sbjct 59230528 TTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGAATGGATAT 59230469 Query 75058 ACTCGTTGAACGACT-GGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT- 75115 ||| || ||| | || || | ||||||| || ||||| |||| ||| ||||| || Sbjct 59230468 TCTCAATGG-CGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACCTGGACATCTTTC 59230410 Query 75116 -TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCA 75174 |||| | || ||| ||||| | ||||||||||| |||||||| ||||| || | Sbjct 59230409 ATGAACCTTCCAG--CGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGCAA 59230352 Query 75175 GTAC 75178 | || Sbjct 59230351 GAAC 59230348 >seq10 Length=82529941 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2342797 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2342738 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 2342737 TGAGCTACGAGAGCA 2342723 >seq3 Length=75414019 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 7260288 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 7260229 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||| ||| || Sbjct 7260228 TGAGCTACGAGAGCCAA 7260212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215917917600