Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq11 149 4e-31 seq10 120 2e-22 seq7 95.1 8e-15 >seq11 Length=66223686 Score = 149 bits (164), Expect = 4e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||||||||||| ||||||||| |||||| || ||||| || |||| | Sbjct 535976 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 535917 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | | || |||||||||||||| ||||| || |||||||||||||| || || Sbjct 535916 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 535857 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| |||| ||| || | ||| || ||| ||||| || Sbjct 535856 ATACCCTCCTTGTCT-TGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 535798 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || || || || || ||||| || |||||| Sbjct 535797 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCATG 535749 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||||||| || | || | || || || || || |||||||| ||||||| Sbjct 535749 GCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGC 535690 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || | | || |||||||| || || ||||| || || | ||| ||||| || || Sbjct 535689 CAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGG 535630 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| |||| |||| |||||| | || || ||| ||||| | Sbjct 535629 AATACCCTCCTTGTCTTGGATC-TTTGCTTTAACATTGTCGATGGTATCTGAACTCTCAA 535571 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| || || || || || || || || || ||||| || |||||| Sbjct 535570 CCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCATG 535521 Score = 91.5 bits (100), Expect = 9e-14 Identities = 161/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||||||||| | || | || || || || || |||||||| ||||||| Sbjct 522426 GCCACCTCTAAGACGAAGAACAAGGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCTGC 522485 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || | | ||||||||||| | || |||||||| || | ||| |||| || || Sbjct 522486 CAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGAGG 522545 Query 34599 CACTCCCTCC-TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | |||||| |||||| |||| |||| |||||| | || || ||| ||||| Sbjct 522546 AATACCCTCCTTTGTCTTGGATC-TTTGCTTTAACATTGTTGATAGTATCTGAACTCTCA 522604 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || |||| || || || || || || || || || ||||| || |||||| Sbjct 522605 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCATG 522655 Score = 84.2 bits (92), Expect = 1e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||||||||||||||||||||| |||||| | |||||| | ||| | Sbjct 521756 CCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTAGATGTTAAAGTCTACA 521815 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCT 34585 || | | | | || |||||||||||||| ||||| || ||| ||| Sbjct 521816 AGGTTCCTCCCATCCTCAAGTTGTTTACCCGCAAAAATCAAATGCT 521861 >seq10 Length=82529941 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || |||||| ||||||||||||||| ||||| | Sbjct 1142269 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCG 1142328 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| || || || ||||| || | | ||| ||||| || || Sbjct 1142329 AGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 1142388 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | ||| || | ||| |||||| ||| ||||| Sbjct 1142389 ATGCCTTCCTTGTCCTGGATC-TTGGCTTTGACATTGTCAATGGTGTCTGAGCTTTCCAC 1142447 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | ||||| ||||| |||||||| Sbjct 1142448 CTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 1142495 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| ||||| || || | || || | | |||||||| || || || ||||| Sbjct 1141164 CTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAA 1141223 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | ||| |||||| | || | |||||||||||| ||| || | || || Sbjct 1141224 GATCAGTCTCTGCTGGTCCTGTGGGATTCCCTCCTTGTC-CTGAATCTTAGCCTTCACAT 1141282 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || || |||||||| |||| ||||| ||||| || || || || |||| Sbjct 1141283 TGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCA 1141342 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 1141343 CAAAAATCTGCAT 1141355 >seq7 Length=79292169 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| || |||||| || ||||| ||||| | || || || Sbjct 77535482 AGACGAAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGT 77535423 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || || ||||| || || | | || || ||||| || | ||| ||| Sbjct 77535422 CCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCC 77535363 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | |||||| | ||||| || || ||||| || | ||| Sbjct 77535362 TTATCCTGGATC-TTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGT 77535304 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | ||||||||||| |||||||| Sbjct 77535303 GATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 77535265 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| ||| |||||| || || || || || | || || || Sbjct 77535710 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGCTAGGGTGCGG 77535651 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || || ||||| || || | ||| ||||| || || | || ||| Sbjct 77535650 CCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 77535591 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | || ||| | ||| |||||| ||| || || || | ||| Sbjct 77535590 TTATCCTGGATC-TTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGT 77535532 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| || | || ||||| || |||||||| Sbjct 77535531 AATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 77535493 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || | ||| || || |||| || || || ||||| || || Sbjct 77536140 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCGTCCTCGAGCTGCTTACCAGCGAA 77536081 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | ||| ||||| || || | |||||||||||| |||| || | || || Sbjct 77536080 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATC-TTAGCCTTCACAT 77536022 Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||| ||||| ||| || || |||| || || || || ||||| | || || | Sbjct 77536021 TATCAATGGTGTCGGAGCTTTCTACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAA 77535962 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 77535961 CAAAAATCTGCAT 77535949 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || ||||| |||||| || || || || || | ||| || || | || ||||| || Sbjct 77536607 TGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 77536548 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| || || || || | ||| ||||| || || | ||||||||||| ||| || Sbjct 77536547 TTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTC-CTGAATCTT 77536489 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | ||| || | || ||||| |||||||| |||| || || || || ||||| Sbjct 77536488 AGCTTTCACATTGTCGATAGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGT 77536429 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || || |||||||| |||||||| Sbjct 77536428 CAAGGTCTTCACAAAGATCTGCAT 77536405 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTCGCTCGTCT 34554 |||||| || || || ||||||||| ||||| || || | |||||| || | || Sbjct 77536386 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTG--CGGCCATCC 77536329 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || || || || || ||||| || || | ||| || || || || | |||||||||||| Sbjct 77536328 TCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCT 77536269 Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 |||| || | || || | || ||||| |||||| || |||| ||| || || Sbjct 77536268 TGGATC-TTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGT 77536210 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| ||||| | || || ||||| || ||||| Sbjct 77536209 TTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 77536177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729553970796