Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq10 131 1e-25 seq11 127 2e-24 seq1 116 3e-21 seq12 111 1e-19 seq7 109 5e-19 >seq10 Length=82529941 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| |||||| | || || ||||| |||||| || Sbjct 1141811 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 1141752 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||||| ||||||||||| || ||||| || || Sbjct 1141751 GACACCATTGACAATGTTAAGGCTAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 1141692 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || || | || ||| || ||| || | ||||||||| Sbjct 1141691 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGTCGTACCCTTGCTGATTACAAC 1141632 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| ||||| | || ||||| || Sbjct 1141631 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAAT 1141582 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| || || || ||| | || || ||||| |||||| || Sbjct 1142495 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 1142436 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || || ||||| |||||||| || || || || Sbjct 1142435 GACACCATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 1142376 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || | ||||| | ||| | ||||||||||| Sbjct 1142375 CAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAAC 1142316 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | || ||||| | ||| | || ||||| || Sbjct 1142315 ATTCAAAAGGAGTCCACTCTTCACTTGGTGCTCCGTCTTCGTGGTGGAAT 1142266 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| | || ||| | |||||||| || ||| | ||| Sbjct 82034789 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAGAGTTCC 82034730 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||| ||| ||||||||||||| || || | |||||| Sbjct 82034729 AACACCATTGACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCAGATCAA 82034670 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||| |||| | || |||||||| | || || || || | |||||||| Sbjct 82034669 CAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATTATACACTTGCTGATTACAAT 82034610 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 |||||||||||||| || | ||| | || ||| || Sbjct 82034609 ATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAGT 82034574 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| |||| || ||| | || || ||||| || ||| ||| Sbjct 1142039 ATGCAAATTTTCGTGAAGACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 1141980 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || || ||||| |||||||| || || || || Sbjct 1141979 GACACCATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 1141920 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || || | || || | |||| || | ||||||||| Sbjct 1141919 CAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGGACCCTTGCTGATTACAAC 1141860 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| | ||| | || ||||| || Sbjct 1141859 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTTCGTCTTCGCGGTGGGAT 1141810 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||| |||| || ||| | || || ||||| || ||| ||| Sbjct 1142267 ATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 1142208 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| |||||||| || || || || Sbjct 1142207 GACACCATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 1142148 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||||| || | || ||| | |||| || | ||||||||| Sbjct 1142147 CAAAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 1142088 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || ||||| | ||| | || ||||| || Sbjct 1142087 ATCCAGAAGGAATCAACCCTTCACTTGGTGCTTCGTCTTCGTGGTGGAAT 1142038 >seq11 Length=66223686 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || || ||||| ||| | || |||||||| || || || Sbjct 534838 ATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGTTCT 534897 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||| |||||||| || || ||||| Sbjct 534898 GACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 534957 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| | ||||| | || || | ||||||||| Sbjct 534958 CAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAAC 535017 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| ||| | ||| | || | ||| |||| ||||| || Sbjct 535018 ATCCAAAAAGAGTCAACCCTTCATCTTGTCCTCCGTCTGCGTGGTGGAAT 535067 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||||||||| ||| |||| |||||||| || || || Sbjct 535066 ATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTCA 535125 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| |||||||||||||| ||||| || || || || || Sbjct 535126 GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 535185 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| | ||||| | || || | ||||||||| Sbjct 535186 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAAC 535245 Query 27168 ATTCAAAAGGAGTCGACC 27185 || ||||||||||| ||| Sbjct 535246 ATCCAAAAGGAGTCCACC 535263 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || ||| |||| || ||| | ||||| | || || || || Sbjct 535749 CATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTC 535808 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || ||| ||| ||||||||||| || || || || || || || Sbjct 535809 AGATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCA 535868 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | || || |||||| | || || | ||| || | || ||||| Sbjct 535869 ACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGATGGGAGGACTCTTGCAGACTACAA 535928 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | ||| |||| ||||||||| | || || || Sbjct 535929 CATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGGGAT 535979 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||||||||| ||| |||| |||||||| || || || Sbjct 523101 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 523042 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| |||||| ||||||| |||| || | || || || Sbjct 523041 GACACCATTGATAATGTCAAAGCTAAAATTGAAGACAAGAAAGGTATTTCCCCAGACCAG 522982 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| | ||||| | || || | ||||||||| Sbjct 522981 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAAC 522922 Query 27168 ATTCAAAAGGAGTCGACC 27185 || | ||||||||| ||| Sbjct 522921 ATCCTAAAGGAGTCCACC 522904 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTA--AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||||||| || || || | ||| ||| | || |||||||| || || | Sbjct 523330 ATGCAGATATTTGTTTTAAGACGCTCATCGGAAAGACCATCACTCTTGAGGTCGAGAGCT 523271 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | ||||| | || ||| || ||||||||||| |||||||| || || |||| Sbjct 523270 CTGACACTATTGATAATGTAAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATC 523211 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||| | || || | || || ||||| | ||||| | || || | ||||||| Sbjct 523210 AGCAGAGGTTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCAAACAATTGCTGATTACA 523151 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| ||| | ||||| ||| | ||| | || | ||| | || ||||| || Sbjct 523150 ACATCCAAGACGAGTCTACC-TCCATCTTGTCCTCCGTCTACGTGGTGGAAT 523100 >seq1 Length=109333515 Score = 116 bits (128), Expect = 3e-21 Identities = 141/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||| || || ||| | || || |||||||| ||| || | Sbjct 97684148 ATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCGAGC 97684207 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||| ||||| || ||||| || || Sbjct 97684208 GACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCACCGGACCAG 97684267 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| || || | ||||| | || | | ||||||||| Sbjct 97684268 CAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGTACTCTAGCTGATTACAAC 97684327 Query 27168 ATTCA-AAAGG 27177 ||||| ||||| Sbjct 97684328 ATTCAGAAAGG 97684338 >seq12 Length=83305730 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| ||||||| | || || || | || Sbjct 82214410 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACTATTACCTTAGAGGTAGAGTCATCA 82214351 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||||||||| |||||||| ||||| || || Sbjct 82214350 GACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCACCAGACCAG 82214291 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 ||||| || || | |||||| || || | || || | ||| || | | || ||||| Sbjct 82214290 CAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGA-TGGCCGAACGCTAGCTGACTACAA 82214232 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||| ||| | || | || | ||| | || ||||| Sbjct 82214231 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGG 82214184 >seq7 Length=79292169 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| ||||| ||| |||| || || || |||||| || Sbjct 77535265 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 77535324 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || || || ||||| || || || ||||| Sbjct 77535325 GATACAATCGACAACGTTAAGGCTAAGATCCAGGATAAGGAAGGAATTCCCCCGGATCAG 77535384 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| || || ||||| ||| | || | | ||||||||| Sbjct 77535385 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAAC 77535444 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | |||||||| | ||| | || ||||| || Sbjct 77535445 ATCCAGAAGGAGTCTACCCTCCATTTGGTGCTTCGTCTACGTGGTGGTAT 77535494 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||| ||| | || ||| | || || ||| ||| Sbjct 77535949 ATGCAGATTTTTGTTAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTAGAAAGCTCC 77536008 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || || || || || || || Sbjct 77536009 GACACCATTGATAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 77536068 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| || || || | || ||| || ||| || |||| |||||| Sbjct 77536069 CAGAGGTTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACCCTTGCCGACTACAAC 77536128 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || | || | ||| |||| ||||| || Sbjct 77536129 ATCCAGAAGGAGTCGACCCTTCACCTTGTCCTCCGTCTGCGTGGTGGTAT 77536178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918334762240