Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 >seq1 Length=109333515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||||||||| |||||| | || |||| || ||| ||||||||||| ||||| || || Sbjct 107507246 GACATGAGCTATCATGCATGTCAGCAAGGCATAAGATGCAATGTTGAATGGCACTCCCAA 107507305 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| || | ||||| ||||| | ||| ||||| ||||||||||| || || || || Sbjct 107507306 ACCCATATCGGCAGATCGCTGATACATCTGACAGGATAGCTCCCCATTGGCTACATAAAA 107507365 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 34610 TTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGG 34669 || || || || ||||||||||| ||||| ||| | ||||| ||||| | || ||||| Sbjct 107507365 TTTTATGTAGCCAATGGGGAGCTATCCTGTCAGATGTATCAGCGATCTGCCGATATGGGT 107507306 Query 34670 TTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || || ||||| ||||||||||| ||| || |||| || | |||||| ||||||||| Sbjct 107507305 TTGGGAGTGCCATTCAACATTGCATCTTATGCCTTGCTGACATGCATGATAGCTCATGTC 107507246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262332760640