Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq11 89.7 4e-13 seq10 84.2 2e-11 seq7 82.4 5e-11 >seq11 Length=66223686 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||||| || ||||| ||| || |||| ||||| ||| | Sbjct 535065 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 535124 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| |||||| ||||| ||||| |||||| |||| || Sbjct 535125 AGACACCATCGATAAT--GTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGAC 535182 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| || | || ||||| || ||||| | || || | || | |||| | ||||| Sbjct 535183 CAGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTG-CTGATTA 535241 Query 27966 CAACATCCAAAAAGAG 27981 |||||||||||| ||| Sbjct 535242 CAACATCCAAAAGGAG 535257 >seq10 Length=82529941 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || | ||||| || || || |||| || ||||| | Sbjct 1141811 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 1141752 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||||| |||||||||||| |||| || | Sbjct 1141751 GACACCATTGACAAT--GTTAAGGCTAAAATTCAGGACAAAGAAGGTATTCCACCAGACC 1141694 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||||||||| || | || |||| || | | | | ||||||| Sbjct 1141693 AGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGTCGTACCCTTGCTGATTACA 1141634 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || ||||| ||||| | || || || Sbjct 1141633 ACATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGG 1141585 >seq7 Length=79292169 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || ||||| |||||| || || | || || || ||| || Sbjct 77536177 ATGCAAATCTTTGTTAAGACCCTTACCGGGAAAACCATCACCCTGGAGGTTGAGAGCTCC 77536236 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| || ||| |||| || | Sbjct 77536237 GACACCATCGACAAT--GTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATC 77536294 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| || || || | || || | |||| ||| | || |||| Sbjct 77536295 AGCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTTTGGCGGACTACA 77536354 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||||| ||| || |||| ||||| Sbjct 77536355 ACATCCAAAAGGAGTCGACCCTGCACTTGGT 77536385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862347955124