Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 seq11 98.7 9e-16 seq1 91.5 1e-13 seq3 82.4 7e-11 >seq10 Length=82529941 Score = 104 bits (114), Expect = 2e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| ||| ||||| || || |||||||| || || || | || || Sbjct 1142286 CACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGGGTACGGCCATCTTC 1142345 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||||||||| || || | ||||||||| | ||| | || || |||||| Sbjct 1142346 AAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG 1142405 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 ||| || ||||| | | | || || ||| ||||| || | ||||| | Sbjct 1142406 GATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGTGATGGT 1142462 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 ||||| || || ||||| ||||| || ||||||| ||| Sbjct 1142463 CTTTCCAGTGAGGGTTTTGACAAATATCTGCATCTGTAC 1142501 >seq11 Length=66223686 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || || ||||| ||||||||||| | || ||||||||| Sbjct 535268 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 535209 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || || | ||||||||| | ||| | | || ||||| ||||| Sbjct 535208 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 535149 Query 39202 TGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258 ||||| | | | || || ||| ||| || || | || ||| | || || Sbjct 535148 GCTTTGACATTATCGATGGTGTCTGAGCT---CTCGACCTCAAGAGTTATAGTCTTCCCG 535092 Query 39259 GTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||||||||||||||||||| Sbjct 535091 GTCAGAGTTTTAACAAAGATTTGCAT 535066 >seq1 Length=109333515 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || ||| ||| || || || || || |||||||| || || | || || Sbjct 87072279 CACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTC 87072338 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || || || || | |||||||||||| | ||| | | || |||||| Sbjct 87072339 AAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTG 87072398 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| | | | || ||| ||||| || || | ||||| | || Sbjct 87072399 GATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTT 87072458 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || ||||| || ||||| |||||||| Sbjct 87072459 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 87072491 >seq3 Length=75414019 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| || ||||| || | || ||||||||||| || ||||| | Sbjct 53872782 CTTTTTGGATATTATAATCCGCCAGTGTACGCCCATCTTCAAGCTGTTTACCAGCAAAGA 53872841 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | || |||||||||| |||||| Sbjct 53872842 TCAGTCGCTGCTGGTCCGGTGG 53872863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545537178956