Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 136 3e-27 seq11 107 1e-18 seq10 107 1e-18 seq12 95.1 8e-15 seq7 89.7 3e-13 >seq1 Length=109333515 Score = 136 bits (150), Expect = 3e-27 Identities = 148/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| ||||| || ||||| || |||||||| || |||||||| || Sbjct 97684145 AAAATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCG 97684204 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||| ||| | ||| | || ||| ||||| |||||| | || || || Sbjct 97684205 AGCGACACTATTGACAATGTCAAAGC-TAAGATTCAAGACAAGGAAGGTATTCCACCGGA 97684263 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || ||||| || || || ||||| | ||| ||| ||| ||||| Sbjct 97684264 CCAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGTACTCTAGCTGATTA 97684323 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 97684324 CAACATTCAGAAAG 97684337 >seq11 Length=66223686 Score = 107 bits (118), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 23603 TACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTG 23662 || || | |||||||| || ||||| || ||||| ||||| || |||||||| || || | Sbjct 534830 TATTTCAGATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCG 534889 Query 23663 ACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCG 23721 | | ||||| |||| ||| | ||| | || | || ||||| ||||| | || Sbjct 534890 AGAGTTCTGACACCATTGATAATGTCAAAGCTAAGA-TTCAAGACAAGGAAGGCATTCCT 534948 Query 23722 CCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC 23781 |||||||| ||| | | || ||||| || ||||| || ||||| | || || | | Sbjct 534949 CCAGATCAGCAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCT 535008 Query 23782 GATTACAACATACAAAAAGAGTCCAC 23807 ||||||||||| ||||||||||| || Sbjct 535009 GATTACAACATCCAAAAAGAGTCAAC 535034 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||| || || ||||| || || ||||| || || || | | Sbjct 523102 AATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTC 523043 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | |||| ||| ||||| ||||| | | ||||| | Sbjct 523042 AGACACCATTGATAATGTCAAAGCTAAAA-TTGAAGACAAGAAAGGTATTTCCCCAGACC 522984 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || ||||| || ||||| | || || | | ||||||| Sbjct 522983 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 522924 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| | ||| |||||||| Sbjct 522923 ACATCCTAAAGGAGTCCAC 522905 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||| || || || || || || ||||| || || || | | Sbjct 535065 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 535124 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | |||| || ||||| |||||| | || ||||| | Sbjct 535125 AGACACCATCGATAATGTCAAAGCTAAAA-TTCAAGACAAGGAAGGTATTCCCCCAGACC 535183 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || ||||| || ||||| | || || | | ||||||| Sbjct 535184 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 535243 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| |||||||| Sbjct 535244 ACATCCAAAAGGAGTCCAC 535262 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTT--AAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 |||||||| || ||| || || |||| ||||| || |||||||| || || || | Sbjct 523330 ATGCAGATATTTGTTTTAAGACGCTCATCGGAAAGACCATCACTCTTGAGGTCGAGAGCT 523271 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 | |||||| |||| | ||||| || ||| ||||| ||||| | || ||||||| Sbjct 523270 CTGACACTATTGATAATGTAAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATC 523211 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || ||||| || ||||| | | || | | ||||||| Sbjct 523210 AGCAGAGGTTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCAAACAATTGCTGATTACA 523151 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||| | ||||| || Sbjct 523150 ACATCCAAGACGAGTCTAC 523132 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || ||||| || ||||| || |||||||| | Sbjct 535294 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 535353 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || |||||| || || ||||| | || ||||| || Sbjct 535354 GATACCATTGACAACGTGAAGGCCAAAATTCAGGATAAGGAAGGGATTCCTCCAGACCAG 535413 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| ||||| || || | | | || | | || ||||| Sbjct 535414 CAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAAT 535473 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || |||||||| || |||||| | ||| Sbjct 535474 ATTCAGAAAGAGTCTACCTTACATCTTGTT 535503 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || || || | || ||||| | Sbjct 535750 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 535809 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| |||| | || ||||| || ||| | || ||||| || Sbjct 535810 GATACCATTGACAATGTGAAAGCAAAGA-TTCAAGACAAGGAGGGTATTCCCCCAGACCA 535868 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || |||||||| || || | | ||| | | || ||||| Sbjct 535869 ACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGATGGGAGGACTCTTGCAGACTACAA 535928 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | ||| | || || | ||| ||||||| Sbjct 535929 CATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 535976 >seq10 Length=82529941 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| ||||| || ||||| || || || || | | Sbjct 1142495 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 1142436 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | | ||||| ||||| | || ||||| || Sbjct 1142435 GACACCATTGACAATGTCAAAGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 1142377 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || ||||| | || || | | ||||||||| Sbjct 1142376 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAA 1142317 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 1142316 CATTCAAAAGGAGTCCAC 1142299 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| || || | || ||||| || ||||| || || ||||| | | Sbjct 1142040 AATGCAAATTTTCGTGAAGACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 1141981 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| ||||| | || | | ||||| ||||| | || ||||| | Sbjct 1141980 CGACACCATTGACAATGTTAAAGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACC 1141922 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || |||||||| || || || || || | || || | | ||||||| Sbjct 1141921 AGCAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGGACCCTTGCTGATTACA 1141862 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 1141861 ACATCCAGAAGGAGTCAAC 1141843 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || || || ||||| || || || || | Sbjct 1141811 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 1141752 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | |||| || |||||||||||| | || ||||| || Sbjct 1141751 GACACCATTGACAATGTTAAGGCTAAAA-TTCAGGACAAAGAAGGTATTCCACCAGACCA 1141693 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || || || || |||| || || | | |||||||| Sbjct 1141692 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGTCGTACCCTTGCTGATTACAA 1141633 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1141632 CATCCAGAAGGAGTCAAC 1141615 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/221 (71%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC---TCC 23667 ||||| || || |||||||| |||| ||||| || || ||||| || || | ||| Sbjct 82034789 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAGAGTTCC 82034730 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||| |||| ||| ||||| |||| | ||| ||||||||||| | || |||| Sbjct 82034729 A---ACACCATTGACAATGTTAAAGCAAAGA-TTGAAGACAAAGAAGGAATTCCCTCAGA 82034674 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGA--ACGCACTTTAGGCGAT 23784 |||||| | ||| ||| || || |||||| | | || || | ||||| | ||| Sbjct 82034673 TCAACAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATTATACACTT--GCTGAT 82034616 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| || ||||| ||||| ||| | ||| | || || || Sbjct 82034615 TACAATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAG 82034575 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| | || ||||| || ||||| || || ||||| | | Sbjct 1142268 AATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 1142209 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| |||| | || | | ||||| ||||| | || ||||| | Sbjct 1142208 CGACACCATTGACAATGTTAAGGCTAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACC 1142150 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || ||||||||||| || || || |||| | || | | ||||||| Sbjct 1142149 AGCAAAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACA 1142090 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || || || || Sbjct 1142089 ACATCCAGAAGGAATCAAC 1142071 >seq12 Length=83305730 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| ||||| || || || || | || || || || Sbjct 82214413 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACTATTACCTTAGAGGTAGAGTCA 82214354 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| |||| | || ||| ||||| ||||| | || ||||| Sbjct 82214353 TCAGACACCATTGACAATGTTAAGGC-TAAGATTCAAGACAAGGAAGGCATTCCACCAGA 82214295 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || ||||| || || || || || | || || ||| || || Sbjct 82214294 CCAGCAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACGCTAGCTGACTA 82214235 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 82214234 CAACATCCAGAAGGAGTCCAC 82214214 >seq7 Length=79292169 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| |||||||| ||||| || |||||| | || || || | | Sbjct 77535949 ATGCAGATTTTTGTTAAGACCCTCACCGGAAAGACCATCACTTTGGAGGTAGAAAGCTCC 77536008 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| || || | || ||||| || Sbjct 77536009 GACACCATTGATAATGTGAAGGC-TAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCA 77536067 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || || || || |||| ||||| | | ||| ||||| Sbjct 77536068 GCAGAGGTTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACCCTTGCCGACTACAA 77536127 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 77536128 CATCCAGAAGGAGTCGAC 77536145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009550566096