Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 >seq2 Length=59803892 Score = 138 bits (152), Expect = 1e-27 Identities = 549/855 (64%), Gaps = 17/855 (2%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| ||| ||| ||||| ||||||| Sbjct 59231054 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGCTCCATCCAATCAAAT 59230995 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| || ||||| || ||| | | ||| | | ||||| |||||||||| Sbjct 59230994 GGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAACAATCTGTCAGCTACA 59230935 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-ATCTCACAGGTAGCGC 4450 || ||||| || | ||||| | || | || ||||| | | | | || ||| || || Sbjct 59230934 AACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAGAGCACA-AGGAAGAGC 59230876 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 | || ||||| |||||| || || |||| | || | | | | || Sbjct 59230875 ATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAATTCCCCTGACTCGCTC 59230816 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | || | | || | || | | | | ||||||||||||||||| |||||||| Sbjct 59230815 CTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGCAAACACGCAAAATCACAGTGCAAACC 59230756 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 ||||||||| ||| | || || || || |||||||| |||||||| || | ||||| Sbjct 59230755 TTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTT 59230696 Query 4631 AAGCCAAAATAT--AGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 | ||| ||||| | | | | | | | | ||||| || ||||| || ||||| Sbjct 59230695 CAACCAGAATATCGAACAGAAGCTTCCGCTG--AAGAAAATCCCTTCAACACAAGCAAAA 59230638 Query 4689 GCTACTAATCGGGACCCGAACGAGCTGGCTTTG---TCTTTAATCCATTTTAATGCCCAG 4745 || || || || | | ||| || || | | | ||||| | ||||| Sbjct 59230637 GCCACCAAACG----CTCAGCGA--AGGTTTCGGACCCATCGATCCAACGAAGGGCCCAT 59230584 Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCA 4805 || || || || | ||| || || ||||| | || || || ||||| || ||||| Sbjct 59230583 TTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGGAACAATTTGCTCTTTTCG 59230524 Query 4806 AATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865 | || | || || | || | || | || ||||| || ||||| ||||| || Sbjct 59230523 TCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGAATGGATATTCTCA 59230464 Query 4866 ATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA 4924 || || || || || || || |||||| | ||| || | || || || || || || Sbjct 59230463 ATGGCGATTTGGAACCCATAGAAAGCA-CGAGCCTCGGCAACCTGGACATCTTTCATGAA 59230405 Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 ||| | | | ||| || || || ||||| ||| |||||||| || | |||||| Sbjct 59230404 CCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGGCAAGAACATG 59230345 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 || || || | | ||| | | | || |||| |||||| | ||| | | | Sbjct 59230344 AGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTGACGAGTATCGGTGGAGAG 59230285 Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104 ||| |||||||| || ||||| || || || ||||| |||||||| |||||| | Sbjct 59230284 ATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACATTTCCCAAATCTG 59230225 Query 5105 AGGATACTGAATCGG 5119 ||||||||||| || Sbjct 59230224 TGGATACTGAATTGG 59230210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049537543996