Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 109 8e-19 >seq4 Length=77197300 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || |||||||||| ||| ||||||||||| || ||||| || ||| | | || Sbjct 61314984 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 61314925 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||| | || | ||||| || || || || ||||| || | ||| | ||||| Sbjct 61314924 ATATGTCTTGATGACAGATTCAATATCGTCTTTGTGGATTCCAACAGATACTCTCATCAG 61314865 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 |||||| || || ||||| || ||||| || || || || | ||| || |||| | Sbjct 61314864 CATATGTTGTGGCCTTTCCACAATCTTACCATGAATCTTTAAAAGGTAAGACCTTTCAAG 61314805 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || ||||||||| ||||| || || Sbjct 61314804 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATGAT 61314757 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||||| || |||| |||| | || | | ||| |||||||| || Sbjct 4559755 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCC 4559814 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| ||||||||| ||| | | |||||||| | || Sbjct 4559815 ATTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGA 4559874 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGAT-ATTAGAGCGCAACGTTTCAATGTATCGTAGA 78336 || || |||||||| | || || | | || | ||| || || | || || || | Sbjct 4559875 TACTCCAATTCCTCCAG-CAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATA 4559933 Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 | ||||| ||||| || || ||||| | || || |||||| Sbjct 4559934 TGCCCTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 4559977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668695799680