Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 123 4e-23 >seq4 Length=77197300 Score = 123 bits (136), Expect = 4e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | ||||| ||||||| |||| | || | | ||| |||||||| || Sbjct 4559755 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCC 4559814 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| ||||||||| ||| |||||||||| | ||| Sbjct 4559815 ATTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGA 4559874 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || || |||||||| || ||| || | |||||| || | |||||||| || Sbjct 4559875 TACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATAT 4559934 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 |||||| |||||||| || ||||| | || || |||||| Sbjct 4559935 GCCCTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 4559977 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || |||||||| | ||| |||||||||||||||||||| || ||| | | || Sbjct 61314984 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 61314925 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||| | || || | ||| ||||| || || ||||| |||| || | ||||| Sbjct 61314924 ATATGTCTTGATGACAGATTCAATATCGTCTTTGTGGATTCCAACAGATACTCTCATCAG 61314865 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 |||||| || || | ||| ||| ||||| || || || || | ||| || |||| | Sbjct 61314864 CATATGTTGTGGCCTTTCCACAATCTTACCATGAATCTTTAAAAGGTAAGACCTTTCAAG 61314805 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || ||||||||| ||||| || || Sbjct 61314804 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATGAT 61314757 Score = 109 bits (120), Expect = 8e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795 |||||| || ||| ||| || ||||| | |||||||||||| | |||| | || | | Sbjct 61315421 ACACCCTTTCTTTTGCCACCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGC 61315362 Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855 | ||| |||| ||| || || ||||| || ||||||||| ||||||||| ||| ||| Sbjct 61315361 AGCATAGGAACAATCCCATTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCA 61315302 Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915 || || || | ||||| || ||||| || || ||| || | |||||| Sbjct 61315301 CGTATGTTGTGCACAGATACACCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCC 61315242 Query 76916 TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 | | || ||||| |||||||| || |||||||| ||||| | || || |||||| Sbjct 61315241 GTAAGAGTATCATATATGCCCTCAATGCTATCATCTTTCATGCATATCAGGAAGCAGCTA 61315182 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | |||||||| ||||||||||||||| | | ||| | | || Sbjct 4560077 AGTTCCAGCATTAAAAAGAGTAGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 4560136 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || || | || | | ||| ||||| | || || ||||||| ||| | ||||| Sbjct 4560137 ATAAGTCTTGATGGCAGATTCAATATCTTTCTTGTGTATCCCTACAGAGACTCTCATCAG 4560196 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || || || | ||||||| || || || || || | ||| ||| |||| Sbjct 4560197 CATGTGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGATCGCTCCAG 4560256 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || |||||| || || || || || Sbjct 4560257 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 4560304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934293059840