Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 178 1e-39 >seq2 Length=59803892 Score = 178 bits (196), Expect = 1e-39 Identities = 581/893 (65%), Gaps = 25/893 (3%) Strand=Plus/Minus Query 23217 TTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCTCTAATGATATAT 23275 ||| ||||| |||||||| | |||| || || ||||| ||||| || | ||| || Sbjct 59231070 TTTCTGATACTCCCCAACTC-TCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCA 59231012 Query 23276 TTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATTCCTT 23333 ||||| ||||||||||||| || ||| || || ||| ||| | || | | Sbjct 59231011 GCTCCATCCAATCAAATGGATTCTGAGCATTGTA--CATCTTGTCATAACCCAAAGCATC 59230954 Query 23334 TAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTAT 23393 || | || || |||||||| || || |||| || ||||||||| || || || | Sbjct 59230953 CAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCAC 59230894 Query 23394 TAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAAT 23453 || |||| |||||| | | ||| |||| || ||||||||| || Sbjct 59230893 CAGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAAC 59230834 Query 23454 TATTTGAACAATAACT---TCTTCACT-AGGTGGATATTTTAAATACTTAAACAATAAAC 23509 ||| | | ||| || ||| | || | | || | ||| || | |||| Sbjct 59230833 AATTC---CCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAA-AGCAAAC 59230778 Query 23510 ATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATC 23569 | ||||||||||| || | ||||| || || ||| || ||||| || || ||||||| Sbjct 59230777 ACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATC 59230718 Query 23570 CTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAA 23629 | |||||||| || |||||||| | ||| ||||| | | || |||| ||||||| Sbjct 59230717 CAGGCATTAACCCCCGTTTTTTCAACCAGAATATCGAACAGAAGCTTCCGCTGAAGAAAA 59230658 Query 23630 TACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAA 23689 | || |||||| ||||| ||||| | ||| | | || ||| | | || | Sbjct 59230657 TCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCGAAGGTT---TCGGACCCATCGA 59230601 Query 23690 TCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTA 23749 |||| | ||| || |||||| || ||||| ||||| |||||||| | Sbjct 59230600 TCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGC----A 59230545 Query 23750 AGAGAAAAGTT----TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 | | || || ||||| ||| ||| | || || | || | || ||||| ||| Sbjct 59230544 CGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTAC 59230485 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 || || ||||| ||||| ||||| || || || |||||||| ||| | ||| || | Sbjct 59230484 ATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCA 59230425 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | || ||||| || | || ||| ||| | || || ||| || || || || Sbjct 59230424 ACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCG 59230365 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAA 23985 ||||| || |||||||||| | || ||||| |||||| | | || || |||| ||| Sbjct 59230364 GCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAG 59230305 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 | | | |||| | || | ||| ||||| || || ||||| ||| ||||| ||| | Sbjct 59230304 TGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTC 59230245 Query 24046 TTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098 || |||||| |||||| | || || ||||| || || ||||| ||| Sbjct 59230244 TTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATC 59230192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487921776800