Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq12 116 3e-21 seq7 116 3e-21 seq11 104 2e-17 seq10 104 2e-17 >seq1 Length=109333515 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||||||||| || || | || || || | || ||||||||||| |||||||| ||| Sbjct 97684335 TTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATC 97684276 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 | ||||| ||||||| |||| | ||||||| | ||| | || |||| || | | Sbjct 97684275 AATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATTGTC 97684217 Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | |||||||||||| || || || | ||| ||||| || ||||| || || || ||||| Sbjct 97684216 AATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAA 97684157 Query 41854 AATCTGCATGTT 41865 |||||||| || Sbjct 97684156 GATCTGCATTTT 97684145 >seq12 Length=83305730 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| ||||| ||||| | Sbjct 82214184 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 82214243 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| |||||||| |||| ||||| ||||| | ||| Sbjct 82214244 AGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGA 82214303 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | || || | ||| | | | ||||| ||||| || Sbjct 82214304 ATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 82214362 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || |||||||| ||||| || || |||||||| || Sbjct 82214363 CTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 82214413 >seq7 Length=79292169 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| ||||| ||||||| Sbjct 77536175 CCACCACGCAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 77536116 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| || ||||| |||| | ||| ||||| | |||| Sbjct 77536115 AGGGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 77536056 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||||| | | | | |||||| || || Sbjct 77536055 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTATCA-ATGGTGTCGGAGCTTTCTAC 77535997 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| || ||||||||||| Sbjct 77535996 CTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 77535949 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||||||||| ||||| ||||| | Sbjct 77535947 CCACCACGGAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 77535888 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||| || ||||| |||| | ||| ||||| | ||| Sbjct 77535887 AGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGG 77535828 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| ||| || |||| ||| | | | |||||| ||||| Sbjct 77535827 ATTCCTTCCTTATCCTGGATCTTAGCCTTC-ACGTTGTCAATGGTGTCGGAGCTTTCCAC 77535769 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| ||||| |||||||| Sbjct 77535768 CTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 77535721 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || ||||| || ||||||||| || || ||||| | Sbjct 77536631 CCACCACGGAGACGGAGGACAAGGTGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCA 77536572 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || ||||| |||| | ||| ||||| | || Sbjct 77536571 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 77536512 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || |||| || | | | |||||| |||||| Sbjct 77536511 ATCCCCTCCTTGTCC-TGAATCTTAGCTTTCACATTGTCGATAGTGTCAGAACTCTCCAC 77536453 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || |||| ||||| || || |||||||| Sbjct 77536452 CTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 77536405 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| || |||||| || ||||| ||||| | | ||||| | || || Sbjct 77536386 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTGCGGCCATCCTC 77536327 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||| || || |||| | ||| || || | ||||| | ||||||||| Sbjct 77536326 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTG 77536267 Query 41773 GATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||| || | || | |||||| ||| ||||||| || || ||| Sbjct 77536266 GATCTTGGCCTTGACATTGTCG--ATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTT 77536209 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || || || ||||| Sbjct 77536208 TTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 77536177 >seq11 Length=66223686 Score = 104 bits (114), Expect = 2e-17 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || | | || |||||||| || ||| ||||| ||||||||||| | Sbjct 536204 CCGCCACGGAGCCTCAGGACAAGATGCAGAGTAGACTCTTTCTGGATGTTATAGTCTGCA 536145 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 |||||||| | || || |||||||| || || || || || | |||||| || | ||| Sbjct 536144 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGG 536085 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | || ||||||||| || | ||||||| || | | | ||| || ||| || Sbjct 536084 ATCCCT-TCCTTGTCC-TGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCT---CT 536030 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| || || || || || ||||| ||||| || || |||||||| Sbjct 536029 CCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 535978 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| ||||||||||| || || ||||||||| ||||| ||||| | || || | | | Sbjct 535965 ACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCC 535906 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || || || || || || || |||| ||||||||||| | ||||| | |||||| Sbjct 535905 ATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTT 535846 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCACCTCCACCGTT 41824 || | ||| | ||||||| || | || | || || | ||| ||||||| || Sbjct 535845 GT-CTTGAATCTTTGCTTTCACATTGTCA-ATGGTATCTGAACTCTCAACCTCCAATGTA 535788 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| ||||| || || || |||||| Sbjct 535787 ATTGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCATG 535749 >seq10 Length=82529941 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| |||||| |||||||| || |||| | Sbjct 1142269 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCG 1142328 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||| || || ||||| | ||| ||||| | |||| Sbjct 1142329 AGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 1142388 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || ||||||||| || | || |||| || | | | ||||| ||| || Sbjct 1142389 ATGCCTTCCTTGTCC-TGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCT---TTC 1142444 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || || || || || || || || || || || |||||||| Sbjct 1142445 CACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 1142495 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || |||||||| ||||| || || | Sbjct 1142041 CCACCACGAAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCA 1142100 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | |||| || |||||||||||||| || ||||| | || ||||| | |||| Sbjct 1142101 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 1142160 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || | || || | ||| | | | |||||| || || Sbjct 1142161 ATGCCTTCCTTGTCC-TGGATCTTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAAC 1142219 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| || || |||||||| ||||| Sbjct 1142220 CTCAAGGGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 1142267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303930654400