Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq174548 102 2e-16 seq284532 98.7 2e-15 seq262399 98.7 2e-15 seq148907 98.7 2e-15 seq243797 95.1 3e-14 seq67946 93.3 9e-14 >seq174548 Length=1903 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 1260 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 1319 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 1320 GCCCCACGGTGGGC 1333 Score = 93.3 bits (102), Expect = 9e-14 Identities = 74/87 (85%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 165698 CTTAAAACG-CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGT 165756 |||| || | ||||||||||||||||||| |||||||||| | || |||| || ||||| Sbjct 1714 CTTATAATGTCTTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAAGCTCTTAACCTTGTGGT 1773 Query 165757 CGTGGGT--TCGAGCCCCACGATGGGC 165781 ||||||| |||||||||||| ||||| Sbjct 1774 CGTGGGTTCTCGAGCCCCACGGTGGGC 1800 >seq284532 Length=1758 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 463 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 522 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 523 CCCACGGTGGGC 534 >seq262399 Length=1756 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1639 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1580 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1579 CCCACGGTGGGC 1568 >seq148907 Length=14895 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9012 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8953 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8952 CCCACGGTGGGC 8941 >seq243797 Length=7834 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||| ||||||||||| Sbjct 2035 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCATGGGTTCGAGC 1976 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1975 CCCACGGTGGGC 1964 >seq67946 Length=21248 Score = 93.3 bits (102), Expect = 9e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 230390 TTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA 230449 || |||| || || || | |||| ||||||| | ||||| ||| |||| ||| || Sbjct 3762 TTGCAGATGCTGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGCTCTGG 3821 Query 230450 TTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTG 230509 | || ||||| | || | ||| | | ||||| || || ||||| ||| | | || | Sbjct 3822 TGGGAATGAATGGAGATTTGATGAGTAAATACATAGAGTTTGTAGCTGACAGATTGTTGG 3881 Query 230510 TTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCA 230569 ||| | ||||| || || ||||||| || |||| || || | | |||||||| | Sbjct 3882 ATGCTTTGGGTTATGACAAGATGTACAATGCTCAGAATCCATTCGATTGGATGGAGCTGA 3941 Query 230570 TTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 || | ||||||||||| || ||||| || ||| | || | || ||||||| Sbjct 3942 TTAGTTTACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGA 3995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1053633569063400