Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq67946 147 2e-30 >seq67946 Length=21248 Score = 147 bits (162), Expect = 2e-30 Identities = 379/561 (68%), Gaps = 15/561 (3%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 |||||| || || || || | ||||||||||| || | || || || || ||||| Sbjct 3706 ACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAA 3647 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA-AAGA 16319 || |||||| || ||||| || ||||| ||||||| | || | | ||| |||| Sbjct 3646 TCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAA-CAGAAGCTTCCGCTGAAGA 3588 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || |||||| | |||||||| | || || |||||| | || | || | Sbjct 3587 AAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTCGGACCCAT--C 3530 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 || |||| | |||||| || || | || | |||| || || || || || Sbjct 3529 GA-TCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCAC 3471 Query 16440 TAAACAATTT-CTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 |||||||| ||||||| | | | ||| | || |||| || | ||| ||||||||| Sbjct 3470 GGAACAATTTGCTCTTTT-CGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTAC 3412 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGC 16557 || || || || || ||||| ||||| || || || |||||| ||||| |||||||| || Sbjct 3411 ATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCA-CGAGCCTCGGC 3353 Query 16558 TATTTGTACTTC-CACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || || | | || | |||| || |||||||| ||||| ||||| Sbjct 3352 AACCTGGACATCTTTCATGAA--CCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAG 3295 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || |||||||| || | | || | ||||||| |||| | ||||| || | | | Sbjct 3294 GCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCC 3235 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCCACTGC 16734 || | ||| |||| | ||| |||||||||| |||||| |||| | |||| || Sbjct 3234 CAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGAT-GCCATGGC 3176 Query 16735 CTTTTTATACATTTTCCAAAT 16755 || || ||||||| |||||| Sbjct 3175 TTTCTTGTACATTTCCCAAAT 3155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509437911197600