Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq260618 96.9 3e-15 seq142480 93.3 4e-14 seq260619 91.5 1e-13 >seq260618 Length=7988 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | || || ||||| ||||| || |||||| || |||| | | Sbjct 396 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 455 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | | ||| || ||| || ||||| ||| | || ||| || Sbjct 456 CGACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 515 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| | || ||||| ||||| || |||||||| | || | ||||||||||| Sbjct 516 GCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 575 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||||||||||||| || ||||| | ||||| Sbjct 576 TATTCAGAAGGAATCAACCCTTCATCTTGTGTT 608 >seq142480 Length=7342 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||||| || ||||| || ||||| || |||||| ||||| Sbjct 5066 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAATTGGAA 5007 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| | ||| |||| |||||||| |||||||| ||||| ||||||||| Sbjct 5006 GATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCAC 4956 >seq260619 Length=5677 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| ||||| || || ||||| ||| || ||| | | Sbjct 419 ATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCT 360 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| || || || || ||||| | ||| ||| || Sbjct 359 GACACCATTGACAATGTTAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 300 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | |||||||||||||| || || || || || || | || |||||||| Sbjct 299 CAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 240 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || ||||||||||| || |||||| ||||| Sbjct 239 ATCCAGAAGGAATCAACCCTTCACTTGGTG 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426721973732900