Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq269538 107 2e-18 seq260619 102 7e-17 seq261322 100 2e-16 seq218976 100 2e-16 seq164539 100 2e-16 seq68649 100 2e-16 seq30399 98.7 8e-16 seq260618 95.1 1e-14 seq183807 84.2 2e-11 >seq269538 Length=12246 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| || || | ||| | ||| ||||| || || ||||||||||| || Sbjct 667 CCGCCACGGAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCA 608 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| || || ||| | || || ||||| || || || Sbjct 607 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGG 548 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| |||||| | | | | ||||||| | |||| Sbjct 547 ATCCCTTCCTTGTCCTGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACC 488 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || ||||| || || | || || ||||| || ||||| Sbjct 487 TCCAATGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCAT 441 >seq260619 Length=5677 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | |||||||| || | || || ||||| || ||||| || || | Sbjct 191 TTCCACCACGAAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAG 250 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | ||||| | ||||||| ||||| ||||||||| | || | || |||||||| || Sbjct 251 CAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGG 310 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| |||||| || || | | | | || ||| | || Sbjct 311 GAATGCCTTCCTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAA 370 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| || || || ||||| || || |||||||| Sbjct 371 CCTCAAGGGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 419 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||| ||||| || |||||||| || || || Sbjct 421 CCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCAGCT 480 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||| || ||||| || || ||| | || || ||||||||||| ||| Sbjct 481 AGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 540 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| ||| || | | | | || || | ||| Sbjct 541 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCTTTCCACC 600 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| || || | ||||| |||||||| ||||| Sbjct 601 TCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 647 >seq261322 Length=6793 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| || || ||| || | ||||| ||||| || || Sbjct 4381 GTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCG 4440 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| | || ||||||||| || | |||||||||||| ||||| || Sbjct 4441 GCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTA 4500 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || | ||| |||| ||||||||||||||| || | || Sbjct 4501 ACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTC 4560 Query 21159 TTGACAAATATTTGCATTTT 21178 || ||||| || |||||||| Sbjct 4561 TTCACAAAGATCTGCATTTT 4580 >seq218976 Length=24853 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | ||| | |||||||||||| || ||||| ||||| || Sbjct 11093 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 11034 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| ||||| || || || |||| | | ||||||||| ||| Sbjct 11033 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGA 10974 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| |||||| | | ||| || || | ||| Sbjct 10973 ATCCCTTCCTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAACC 10914 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| || ||||| || |||| ||||| || || || ||||| || Sbjct 10913 TCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 10864 >seq164539 Length=4213 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | |||| ||||||||||| || || || ||||| || Sbjct 3941 CCACCACGGAGACGGAGGACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCA 4000 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| || || || |||| | ||||||||||| || Sbjct 4001 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGG 4060 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| |||||| | | ||| || ||| |||| Sbjct 4061 ATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCGATGGTGTCAGAACTCTCCACC 4120 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || |||||||| ||||| || || || ||||| || |||||| Sbjct 4121 TCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 4168 >seq68649 Length=3576 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| ||||| || || ||| || | ||||| ||||| || ||| Sbjct 2492 GTGGATTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCC 2433 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| | ||||||||||| || | |||||||||||| ||||| || Sbjct 2432 GCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTA 2373 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | ||||| | ||| || | |||||| |||||||| |||| || Sbjct 2372 ACATTGTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTC 2313 Query 21159 TTGACAAATATTTGCATTTT 21178 || ||||| || |||||||| Sbjct 2312 TTCACAAAGATCTGCATTTT 2293 >seq30399 Length=1829 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | ||||||||||| || ||||| || || || Sbjct 971 CCACCACGTAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCT 912 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||| ||| || || || | ||||| || ||||| ||| ||| Sbjct 911 AGAGTACGTCCGTCCTCCAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGATCCGGGGGA 852 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| || || | | ||| |||||| ||| Sbjct 851 ATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACC 792 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| ||||| | ||||| ||||| || ||||| Sbjct 791 TCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 745 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | ||||||||||| || ||||| ||||| || Sbjct 1199 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 1140 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||| ||| || || ||| | || | ||||||||||| ||| Sbjct 1139 AGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 1080 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||||||||| || |||||| Sbjct 1079 ATGCCTTCCTTATCCTGGATCTT 1057 >seq260618 Length=7988 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | |||||||| ||||||||||| ||||| ||||||||| Sbjct 851 CCACCACGGAGACGGAGGACAAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGCC 792 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | || || || || || || ||| | || ||||||||||||||| || Sbjct 791 AGAGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAAGATCAGTCTCTGCTGGTCCGGTGGG 732 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| || || ||||| | | | | |||||| |||| Sbjct 731 ATTCCCTCCTTGTCCTGAATTTTAGCCTTCACATTGTCAATGGTATCAGAACTCTCCACC 672 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| || || || || || || ||||| || ||||| Sbjct 671 TCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 625 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| || || || ||||| | ||||||| ||||| |||||| Sbjct 137 GTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCC 78 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||| | || | || |||||||| ||| | |||||||||||| |||||| Sbjct 77 GCAAAGATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTT 25 >seq183807 Length=6005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||| || | ||| | || ||||| | ||| ||||| || || | Sbjct 5655 TTCCACCACGTAGACGGAGGACAAGATGGAG-GTAGACTCGTCTTGGATGTTGTAATCAG 5597 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | | |||||| | || || |||||||| || ||| | || || |||||||| || | Sbjct 5596 CAACTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGAG 5537 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| ||||| ||| || | | | ||| ||| | ||| Sbjct 5536 GAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCAATAGTGTCAGAGCTCTCGA 5477 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGT-TTTGACAAATATTTGCAT 21175 || | || |||||||| ||||| | ||| || |||||||| ||||| Sbjct 5476 CCTCAAGAGTGATGGTCTTTCCGGTGAGCGTCTTAAACAAATATCTGCAT 5427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420668071912880