Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq142480 105 1e-17 seq30399 104 4e-17 seq260619 100 4e-16 seq260618 100 4e-16 seq269538 93.3 6e-14 seq250116 89.7 8e-13 >seq142480 Length=7342 Score = 105 bits (116), Expect = 1e-17 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || ||||||||||| ||||| |||||||| || || || |||||||| ||||||||||| Sbjct 5069 CAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAATTG 5010 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 || ||| || |||| | | ||||| || ||||| |||||||||||| Sbjct 5009 GAAGATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACT 4962 >seq30399 Length=1829 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||| || ||||| | ||| | Sbjct 745 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 804 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| || | || || || || ||||| ||||| || || || ||||| Sbjct 805 GATACAATCGACAACGTTAAGGCTAAGATCCAGGATAAGGAAGGAATTCCCCCGGATCAG 864 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| || || ||||| || || ||||| | || || ||| ||||| || Sbjct 865 CAAAGGCTTATCTTCGCTGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAAC 924 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | |||||||| | ||| |||| |||||||| Sbjct 925 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTACGTGGTGGTAT 974 >seq260619 Length=5677 Score = 100 bits (110), Expect = 4e-16 Identities = 171/244 (70%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA- 124592 |||| ||||| |||||| | || || || || || || ||||| || | ||| | ||| Sbjct 652 TACAGATGCAGATATTTGTTAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAA 593 Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 || | || || ||| ||| | ||| || || || || || ||||| || || || Sbjct 592 GCTCA-GACACCATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCA 534 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 || || || ||||| || ||||||||||| || | || || |||| || ||| ||| Sbjct 533 GACCAGCAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGACGGTCGTACTCTAGCTGAT 474 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 || || ||||| ||||| |||||| | || ||||| | ||| | || ||||| || || Sbjct 473 TACAACATTCAGAAAGAGTCAACTCTCCACTTGGTGCTCCGTCTTCGTGGTGGCATGCAA 414 Query 124773 AATT 124776 | || Sbjct 413 ATTT 410 >seq260618 Length=7988 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || ||||| || || || | ||| | ||| | Sbjct 169 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 228 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||| || ||||||||||| ||||| || || Sbjct 229 GACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 288 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| ||||| ||| | ||||| | || || | | ||||| || Sbjct 289 CAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGATTACAAC 348 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || ||||| | ||| | |||||||| || Sbjct 349 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAAT 398 >seq269538 Length=12246 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 124555 AGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAATGATACAATTTCTAAT 124613 ||||| | ||||| || || || ||| | ||| |||| || | ||||| || ||| Sbjct 1 AGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA-GATACTATCGACAAT 59 Query 124614 -TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTT 124672 ||||| || || || ||||| || || ||||| || || || || || || | || || Sbjct 60 GTTAAAGCA-AAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAGCAGAGATTGATCTT 118 Query 124673 TGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATC 124732 ||| ||||| ||| | |||||| | | || || | |||||| || ||||| |||||||| Sbjct 119 TGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAACATTCAGAAAGAATC 178 Query 124733 AACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||| |||| | ||| | || | ||||||| || ||| || Sbjct 179 AACCCTGCACCTTGTTCTTCGCCTTAGAGGTGGCATGCAAATTT 222 >seq250116 Length=2524 Score = 89.7 bits (98), Expect = 8e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || || || || || ||||||||| | ||| | || ||| | Sbjct 175 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 116 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | ||| ||||||||||| || |||||||| || || || || Sbjct 115 -GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 57 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA 124703 || ||||| || ||||| || ||||| | || ||| | |||||| Sbjct 56 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACA 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752536351424000