Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq45869 120 3e-22 seq261322 105 8e-18 seq269538 95.1 1e-14 seq164539 95.1 1e-14 seq260619 93.3 5e-14 seq218976 89.7 6e-13 seq68649 89.7 6e-13 seq30399 89.7 6e-13 seq260618 86.0 7e-12 >seq45869 Length=5042 Score = 120 bits (132), Expect = 3e-22 Identities = 146/195 (75%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 42994 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||||||||| ||||| || | || || |||||||| || ||||| Sbjct 4374 CCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 4433 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | |||||||||||| | || | | ||||||| | ||| | || | ||||| | Sbjct 4434 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATT 4492 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||||||||||| || || | |||||| || || ||||| || || || || Sbjct 4493 GTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCAC 4552 Query 43172 AAAGATTTGCATTTT 43186 ||||| |||||||| Sbjct 4553 GAAGATCTGCATTTT 4567 >seq261322 Length=6793 Score = 105 bits (116), Expect = 8e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || || || | || || ||||||||||| ||||| Sbjct 4386 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 4445 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | || | || ||||||| | ||| | || | | | | | Sbjct 4446 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACAT 4504 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || || || || | || ||||| |||||||| || ||||| | Sbjct 4505 TGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCA 4564 Query 43171 CAAAGATTTGCATTTTT 43187 ||||||| ||||||||| Sbjct 4565 CAAAGATCTGCATTTTT 4581 >seq269538 Length=12246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| ||||||||||||| ||| | || |||||| || || ||||| || || Sbjct 439 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 380 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | |||| || || || |||||||| || || | ||||| ||||| | || Sbjct 379 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 320 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTT 43105 | | |||||||| | ||| | |||| || Sbjct 319 ATACCCTCCTTGT-CTTGAATCTTTGCTT 292 >seq164539 Length=4213 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || |||||||| ||||| || || || | || || |||||| Sbjct 3965 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 4024 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 ||||||||||| || | | ||||||||| | || | | |||||||||| ||| | || Sbjct 4025 TTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTT 4083 Query 43101 TG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCC 43156 | ||| | | | | ||||| ||| ||||| || | |||||||| || || Sbjct 4084 AGCTTTCACATTGTCGATGGTGTCAGAACTC---TCCACCTCCAAAGTGATGGTCTTCCC 4140 Query 43157 CGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||| |||||||| |||||| Sbjct 4141 GGTCAAGGTCTTCACAAAGATCTGCATT 4168 >seq260619 Length=5677 Score = 93.3 bits (102), Expect = 5e-14 Identities = 163/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || ||| || ||||| ||||||||||| ||||| || | Sbjct 432 ACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCAGCTAGAGTACGACC 491 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || || | ||||||||| | || | || ||||| Sbjct 492 GTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTT 551 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 |||| ||| || ||| | | | | ||||| ||| |||||| || | || Sbjct 552 GTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGT 608 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCCGAATACAA 43200 ||| || || || || || || || ||||| || ||||| | ||| | ||| ||| Sbjct 609 GATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCATCTGTACACAAAATTCAA 664 >seq218976 Length=24853 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| | ||| | ||| |||||| || || ||||| || || ||||| || | Sbjct 11082 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 11023 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | ||||||||||| | || | | ||||| Sbjct 11022 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 10963 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || ||| | | | | |||||| || || || || | ||||| Sbjct 10962 GTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 10903 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || |||||||| || || || ||||| ||||| || Sbjct 10902 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 10864 >seq68649 Length=3576 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| ||||| || || || | || || |||||||| || ||||| Sbjct 2486 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCCGCGAAA 2427 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | | ||||||||| | || | || ||||||||| ||| | || | | | | | Sbjct 2426 ATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACATT 2368 Query 43113 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | || | | || || || || || | || || || ||||||||||| ||||| || Sbjct 2367 GTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 2308 Query 43172 AAAGATTTGCATTTTT 43187 |||||| ||||||||| Sbjct 2307 AAAGATCTGCATTTTT 2292 >seq30399 Length=1829 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || ||||||||||||||||| Sbjct 1620 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 1561 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | | |||||||||| ||| || || | | Sbjct 1560 AATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 1501 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| |||||| || | |||||||| || || || || ||||| || Sbjct 1500 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAAC 1441 Query 43172 AAAGATTTGCAT 43183 ||| || ||||| Sbjct 1440 AAAAATCTGCAT 1429 >seq260618 Length=7988 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||| | ||||| ||||| || | || |||||| || || ||||||||||| Sbjct 396 TCCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 337 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || || ||||| || || || || | | ||||||||| | || Sbjct 336 AAGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGG 277 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | || |||||| ||| |||| | | | | | | | | ||||| ||||| Sbjct 276 AATACCTTCTTTGTCC-TGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCA 218 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| || ||||| || | ||||| |||||||||||||| Sbjct 217 CCTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569607667930400