Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq269538 111 1e-19 seq30399 102 5e-17 seq261322 96.9 2e-15 seq218976 95.1 8e-15 seq68649 95.1 8e-15 seq45869 95.1 8e-15 seq256924 91.5 9e-14 >seq269538 Length=12246 Score = 111 bits (122), Expect = 1e-19 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || |||||||| || || || | |||| |||||||| ||||| ||||| | Sbjct 667 CCGCCACGGAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCA 608 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | |||||| || || || ||||||| ||| || || | ||| Sbjct 607 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGG 548 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| ||||||| ||||| | || | | || | ||| | || | Sbjct 547 ATCCCT-TCCTTGTCCTGTATCTTT-GCTTTCACATTGTCAATAGTATCAGAGCTCTCCA 490 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 | |||| ||||| || || || || ||||| |||||||||||||||||| ||| Sbjct 489 CCTCCAATGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCATCCCTC 436 >seq30399 Length=1829 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || ||| |||| || | |||||| || |||||| Sbjct 1619 TCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAA 1560 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || ||||||||| ||| | | ||||||||| ||||| ||| | || Sbjct 1559 ATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTA 1500 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| ||| || |||| |||||||| || |||||||| || || ||| Sbjct 1499 TCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAACA 1440 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 1439 AAAATCTGCAT 1429 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || | || ||| |||| ||||||||||| || ||||| Sbjct 935 TCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCCTCCAACTGCTTTCCAGCGAAG 876 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||| || ||| | | ||||| || ||||| ||| | | | Sbjct 875 ATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTG 816 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | ||| || || | ||||| || || |||||||||||||||||| Sbjct 815 TCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACA 756 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 755 AAGATCTGCATC 744 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | || ||| | || ||||||||||| ||||| || Sbjct 1163 TCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAG 1104 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || ||||||||| ||| | || ||||| || ||||| ||| | | | Sbjct 1103 ATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACGTTG 1044 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | |||||| || | || || || || || |||||||| ||||| Sbjct 1043 TCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTACCCGTGAGAGTCTTCACG 984 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 983 AAGATCTGCAT 973 Score = 84.2 bits (92), Expect = 1e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288 ||| | || || | ||||||||| || ||||| | || ||||||||| ||| | | | Sbjct 1817 CGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCC 1758 Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348 |||||||| ||||| ||| | || | | || | |||| || || |||| Sbjct 1757 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGG 1698 Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| ||||| || || ||||||||||| ||||| Sbjct 1697 GTGATGGTTTTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 1657 >seq261322 Length=6793 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | ||| ||| | || || | |||||| || |||||| Sbjct 4387 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAA 4446 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| || | || |||||||| ||||| ||| | || | Sbjct 4447 ATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTG 4506 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || || |||| || ||||| ||||| || || || |||||| Sbjct 4507 TCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCACA 4566 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 4567 AAGATCTGCAT 4577 >seq218976 Length=24853 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || || | ||| || ||||| ||||||||||||| || ||| | || Sbjct 11078 AGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCC 11019 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| | ||||||||||| ||| | | |||||||| Sbjct 11018 TCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCC 10959 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | || | | || | |||| || || || || | ||||| || Sbjct 10958 TGGATCTTG-GCTTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGT 10900 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 10899 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 10866 >seq68649 Length=3576 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| | ||| ||| | || || | |||||| || ||||| Sbjct 2487 TTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCCGCGAA 2428 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| | || ||||||||| || | || |||||||| ||||| ||| | || Sbjct 2427 AATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATT 2368 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||| | || || || || | || || || ||||| || || || ||||| Sbjct 2367 GTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 2308 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 2307 AAAGATCTGCAT 2296 >seq45869 Length=5042 Score = 95.1 bits (104), Expect = 8e-15 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 ||||||| |||||||| || | || ||| | || || | |||||| || ||||| | Sbjct 4375 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 4434 Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCG 34318 | | ||||||||||| || | | |||||||| ||| || ||||| | || | Sbjct 4435 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATC-TTAGCTTTGACATTG 4493 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| ||||||| || || | |||||| || || || || ||||||||||| Sbjct 4494 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 4553 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 4554 AAGATCTGCAT 4564 >seq256924 Length=5511 Score = 91.5 bits (100), Expect = 9e-14 Identities = 150/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTC 34236 ||||| || |||| ||| || |||||| ||| ||||||| | || | || ||| | || Sbjct 4518 AGCACTAGATGTAGAGTTGATTTTTTCTGGATGCTGTAGTCCGCCAAGGTG-CGGCCATC 4460 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | |||||| || || ||||| |||| |||||||| || | | || ||||| Sbjct 4459 CTCGAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTC 4400 Query 34297 GGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 |||||| || |||| || | | || | || | | ||||||| |||| || |||| Sbjct 4399 TTGTATCTTG-GCCTTAGCATTGTCGATAGTATTGCTGAATTCGACTTCCAGAGTAATGG 4341 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCT 34385 |||| | ||| ||||||||||| || |||| Sbjct 4340 TTTTACTGGT-AGAGTTTTCACGAATATCT 4312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321854622300800