Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq260618 102 7e-17 seq218976 95.1 1e-14 seq45869 89.7 5e-13 seq260619 87.8 2e-12 >seq260618 Length=7988 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| ||||| || || ||| | || || ||| ||| Sbjct 397 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCC 456 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || |||||| || || | || || |||||| Sbjct 457 GACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCAG 516 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG-CGATTATAA 31371 || | | || || |||||||| ||||||||||| | ||| || || |||||| || Sbjct 517 CAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGAC-ATTAGCCGATTACAA 575 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || |||||||| || | || || ||||| |||| Sbjct 576 TATTCAGAAGGAATCAACCCTTCATCTTGTGTTGAGGCTCAGGGGAGGTA 625 >seq218976 Length=24853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || ||||||||| | || ||||| | Sbjct 10864 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 10923 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || ||| | || |||||||||||| | || || ||| Sbjct 10924 TCCGACACCATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 10983 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || ||||| || || ||| | || || | ||| | ||| || Sbjct 10984 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 11043 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| ||||| || || Sbjct 11044 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 11078 >seq45869 Length=5042 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || ||||| || || || |||||||| | || |||||| || Sbjct 4567 AAAATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCG 4508 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | | || | |||||| | || ||||||||||| | || || ||| Sbjct 4507 AGCGACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCACCGGAC 4448 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC-GATT 31367 |||||||| | || ||||| || || ||| | ||||| | | | ||| | ||| |||| Sbjct 4447 CAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGA-TGGACGTACTCT-AGCTGATT 4390 Query 31368 ATAACATTCAAAAAG 31382 | |||||||| |||| Sbjct 4389 ACAACATTCAGAAAG 4375 >seq260619 Length=5677 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| || ||| ||||||| || || |||||| | || |||||| || Sbjct 420 CATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 361 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || |||||||||||| | || || ||||| Sbjct 360 TGACACCATTGACAATGTTAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 301 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || || || ||||| ||| | || ||| | ||| | ||||| || Sbjct 300 GCAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAA 241 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||||| || ||||| |||| || Sbjct 240 CATCCAGAAGGAATCAACCCTTCACTTGGTGCT 208 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || || || || |||||| | || || ||| || Sbjct 647 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCA 588 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | || ||||||||||||| | || || |||||| Sbjct 587 GACACCATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 528 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | || || || || || || ||| | |||||| | ||| | ||| ||||| || Sbjct 527 CAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGACGGTCGTACTCT-AGCTGATTACAA 469 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| ||||| || ||||| || |||| || Sbjct 468 CATTCAGAAAGAGTCAACTCTCCACTTGGTGCT 436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444043624305600